Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 TSPY12P-201ENST00000421279 868 ntBASIC14.77□□□□□ -0.05
SDCBPO00560 KRT18P38-201ENST00000449496 1282 ntBASIC14.77□□□□□ -0.05
SDCBPO00560 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.77□□□□□ -0.05
SDCBPO00560 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC14.77□□□□□ -0.05
SDCBPO00560 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.05
SDCBPO00560 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
SDCBPO00560 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
SDCBPO00560 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
SDCBPO00560 DOC2GP-204ENST00000639052 2548 ntBASIC14.76□□□□□ -0.05
SDCBPO00560 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.76□□□□□ -0.05
SDCBPO00560 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.76□□□□□ -0.05
SDCBPO00560 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 NFIC-211ENST00000641145 8399 ntBASIC14.76□□□□□ -0.05
SDCBPO00560 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.76□□□□□ -0.05
SDCBPO00560 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.76□□□□□ -0.05
SDCBPO00560 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
SDCBPO00560 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC14.75□□□□□ -0.05
SDCBPO00560 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 LINC01311-201ENST00000565162 1445 ntBASIC14.75□□□□□ -0.05
SDCBPO00560 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.75□□□□□ -0.05
SDCBPO00560 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
SDCBPO00560 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 HBZP1-201ENST00000354915 429 ntBASIC14.75□□□□□ -0.05
SDCBPO00560 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.75□□□□□ -0.05
SDCBPO00560 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC14.75□□□□□ -0.05
SDCBPO00560 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.75□□□□□ -0.05
SDCBPO00560 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.75□□□□□ -0.05
SDCBPO00560 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.75□□□□□ -0.05
SDCBPO00560 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC14.75□□□□□ -0.05
SDCBPO00560 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC14.75□□□□□ -0.05
SDCBPO00560 LINC01238-205ENST00000567549 1107 ntBASIC14.75□□□□□ -0.05
SDCBPO00560 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.75□□□□□ -0.05
SDCBPO00560 AC009154.2-201ENST00000621177 724 ntBASIC14.75□□□□□ -0.05
SDCBPO00560 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC14.75□□□□□ -0.05
SDCBPO00560 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SDCBPO00560 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
SDCBPO00560 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
SDCBPO00560 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms