Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.08□□□□□ -0.32
HLA-DQA1P01909 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 AC126177.1-201ENST00000547829 2218 ntBASIC13.07□□□□□ -0.32
HLA-DQA1P01909 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 DENND3-207ENST00000518347 850 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 AC006058.3-201ENST00000606217 1069 ntBASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
HLA-DQA1P01909 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC046185.3-201ENST00000623228 1824 ntBASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DQA1P01909 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms