Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 DDX43P3-201ENST00000441064 443 ntBASIC12.82□□□□□ -0.36
CKS2P33552 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 UNC93B5-201ENST00000530315 699 ntBASIC12.82□□□□□ -0.36
CKS2P33552 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 RARRES2P10-201ENST00000564312 460 ntBASIC12.82□□□□□ -0.36
CKS2P33552 AC008687.5-201ENST00000593746 558 ntBASIC12.82□□□□□ -0.36
CKS2P33552 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 AL513523.2-202ENST00000427283 2040 ntBASIC12.82□□□□□ -0.36
CKS2P33552 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 AL513477.1-201ENST00000602865 2407 ntBASIC12.82□□□□□ -0.36
CKS2P33552 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 CYP2T1P-202ENST00000641596 2535 ntBASIC12.82□□□□□ -0.36
CKS2P33552 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CKS2P33552 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.82□□□□□ -0.36
CKS2P33552 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CKS2P33552 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC12.81□□□□□ -0.36
CKS2P33552 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 AC132872.4-202ENST00000622924 2756 ntBASIC12.81□□□□□ -0.36
CKS2P33552 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CKS2P33552 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 LINC00554-201ENST00000564841 3011 ntBASIC12.81□□□□□ -0.36
CKS2P33552 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CKS2P33552 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.81□□□□□ -0.36
CKS2P33552 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 MIR6786-201ENST00000616843 113 ntBASIC12.81□□□□□ -0.36
CKS2P33552 ANKRD20A6P-201ENST00000618763 204 ntBASIC12.81□□□□□ -0.36
CKS2P33552 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CKS2P33552 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC12.81□□□□□ -0.36
CKS2P33552 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CKS2P33552 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CKS2P33552 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
CKS2P33552 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CKS2P33552 LYSMD4-203ENST00000378904 2122 ntBASIC12.8□□□□□ -0.36
CKS2P33552 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CKS2P33552 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CKS2P33552 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms