RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
SDC4-201ENST00000372733 SHROOM4Q9ULL8 1493 aa28.57■■■□□ 2.16
SDC4-201ENST00000372733 SUPT5HO00267 1087 aaKnown RBP28.14■■■□□ 2.1
SDC4-201ENST00000372733 ZCCHC6Q5VYS8 1495 aaKnown RBP27.99■■■□□ 2.07
SDC4-201ENST00000372733 CCDC180Q9P1Z9 1646 aa27.8■■■□□ 2.04
SDC4-201ENST00000372733 MYO15BQ96JP2 1530 aa27.59■■■□□ 2.01
SDC4-201ENST00000372733 CHIC1Q5VXU3 224 aa27.49■■□□□ 1.99
SDC4-201ENST00000372733 DCAF8L2P0C7V8 631 aa27.34■■□□□ 1.97
SDC4-201ENST00000372733 HRCP23327 699 aa27.31■■□□□ 1.96
SDC4-201ENST00000372733 PCGF6Q9BYE7 350 aa27.08■■□□□ 1.93
SDC4-201ENST00000372733 DCAF1Q9Y4B6 1507 aa26.97■■□□□ 1.91
SDC4-201ENST00000372733 PPARGC1BQ86YN6 1023 aaKnown RBP26.79■■□□□ 1.88
SDC4-201ENST00000372733 LOC105371045A0A1W2PR82 267 aa26.75■■□□□ 1.87
SDC4-201ENST00000372733 ABCC9O60706 1549 aa26.51■■□□□ 1.83
SDC4-201ENST00000372733 TRIM26Q12899 539 aaPredicted RBP26.39■■□□□ 1.81
SDC4-201ENST00000372733 RSF1Q96T23 1441 aaPredicted RBP26.28■■□□□ 1.8
SDC4-201ENST00000372733 SCRIBQ14160 1630 aa26.27■■□□□ 1.8
SDC4-201ENST00000372733 RB1CC1Q8TDY2 1594 aa26.14■■□□□ 1.77
SDC4-201ENST00000372733 TRIM41Q8WV44 630 aa26.11■■□□□ 1.77
SDC4-201ENST00000372733 FAM9AQ8IZU1 332 aaPredicted RBP26.02■■□□□ 1.76
SDC4-201ENST00000372733 ZEB1P37275 1124 aaPredicted RBP25.92■■□□□ 1.74
SDC4-201ENST00000372733 EHMT2Q96KQ7 1210 aa25.87■■□□□ 1.73
SDC4-201ENST00000372733 CECR2Q9BXF3 1484 aa25.78■■□□□ 1.72
SDC4-201ENST00000372733 MROH2BQ7Z745 1585 aa25.72■■□□□ 1.71
SDC4-201ENST00000372733 NACADO15069 1562 aa25.61■■□□□ 1.69
SDC4-201ENST00000372733 WIZO95785 1651 aa25.61■■□□□ 1.69
SDC4-201ENST00000372733 SCAF1Q9H7N4 1312 aaKnown RBP25.45■■□□□ 1.67
SDC4-201ENST00000372733 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
SDC4-201ENST00000372733 EIF4G1Q04637 1599 aaKnown RBP25.42■■□□□ 1.66
SDC4-201ENST00000372733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.35■■□□□ 1.65
SDC4-201ENST00000372733 CCER1Q8TC90 406 aaPredicted RBP25.27■■□□□ 1.64
SDC4-201ENST00000372733 PELP1Q8IZL8 1130 aaKnown RBP25.23■■□□□ 1.63
SDC4-201ENST00000372733 ABCC8Q09428 1581 aa25.22■■□□□ 1.63
SDC4-201ENST00000372733 CCDC88BA6NC98 1476 aa25.17■■□□□ 1.62
SDC4-201ENST00000372733 TOP2AP11388 1531 aaKnown RBP25.16■■□□□ 1.62
SDC4-201ENST00000372733 TTBK1Q5TCY1 1321 aaPredicted RBP25.14■■□□□ 1.62
SDC4-201ENST00000372733 WRNQ14191 1432 aaPredicted RBP eCLIP25.1■■□□□ 1.61
SDC4-201ENST00000372733 CEP162Q5TB80 1403 aa25.09■■□□□ 1.61
SDC4-201ENST00000372733 SMARCA2P51531 1590 aa25.06■■□□□ 1.6
SDC4-201ENST00000372733 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
SDC4-201ENST00000372733 SOGA1O94964 1423 aa25.03■■□□□ 1.6
SDC4-201ENST00000372733 ACIN1Q9UKV3 1341 aaKnown RBP25.03■■□□□ 1.6
SDC4-201ENST00000372733 NEUROD1Q13562 356 aa25.01■■□□□ 1.59
SDC4-201ENST00000372733 DIEXFQ68CQ4 756 aaKnown RBP24.98■■□□□ 1.59
SDC4-201ENST00000372733 TNIKQ9UKE5 1360 aa24.95■■□□□ 1.58
SDC4-201ENST00000372733 RUSC2Q8N2Y8 1516 aa24.91■■□□□ 1.58
SDC4-201ENST00000372733 CSRNP3Q8WYN3 585 aa24.85■■□□□ 1.57
SDC4-201ENST00000372733 EEA1Q15075 1411 aa24.85■■□□□ 1.57
SDC4-201ENST00000372733 UBTFP17480 764 aaKnown RBP24.84■■□□□ 1.57
SDC4-201ENST00000372733 UNC13AQ9UPW8 1703 aa24.84■■□□□ 1.57
SDC4-201ENST00000372733 CENPBP07199 599 aaPredicted RBP24.79■■□□□ 1.56
SDC4-201ENST00000372733 GTF3C3Q9Y5Q9 886 aa24.78■■□□□ 1.56
SDC4-201ENST00000372733 GOLGA3Q08378 1498 aa24.77■■□□□ 1.56
SDC4-201ENST00000372733 ZNF316A6NFI3 1004 aaPredicted RBP24.66■■□□□ 1.54
SDC4-201ENST00000372733 SYNJ1O43426 1573 aa24.58■■□□□ 1.53
SDC4-201ENST00000372733 CEP164Q9UPV0 1460 aa24.57■■□□□ 1.52
SDC4-201ENST00000372733 HNRNPUL2Q1KMD3 747 aaKnown RBP24.57■■□□□ 1.52
SDC4-201ENST00000372733 PABPN1Q86U42 306 aaKnown RBP eCLIP24.56■■□□□ 1.52
SDC4-201ENST00000372733 KIF21BO75037 1637 aa24.54■■□□□ 1.52
SDC4-201ENST00000372733 CLIP1P30622 1438 aa24.53■■□□□ 1.52
SDC4-201ENST00000372733 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
SDC4-201ENST00000372733 YTHDC1Q96MU7 727 aaKnown RBP24.5■■□□□ 1.51
SDC4-201ENST00000372733 PEG3Q9GZU2 1588 aa24.49■■□□□ 1.51
SDC4-201ENST00000372733 VPS8Q8N3P4 1428 aa24.45■■□□□ 1.51
SDC4-201ENST00000372733 MIER1Q8N108 512 aa24.42■■□□□ 1.5
SDC4-201ENST00000372733 RAPGEF2Q9Y4G8 1499 aa24.4■■□□□ 1.5
SDC4-201ENST00000372733 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
SDC4-201ENST00000372733 RANGAP1P46060 587 aaPredicted RBP24.35■■□□□ 1.49
SDC4-201ENST00000372733 APLP2Q06481 763 aa24.32■■□□□ 1.48
SDC4-201ENST00000372733 ATAD2BQ9ULI0 1458 aa24.31■■□□□ 1.48
SDC4-201ENST00000372733 TOP2BQ02880 1626 aa24.18■■□□□ 1.46
SDC4-201ENST00000372733 DHX57Q6P158 1386 aaKnown RBP24.1■■□□□ 1.45
SDC4-201ENST00000372733 ARAP1Q96P48 1450 aa24.1■■□□□ 1.45
SDC4-201ENST00000372733 BIVM-ERCC5R4GMW8 1640 aa24.08■■□□□ 1.45
SDC4-201ENST00000372733 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
SDC4-201ENST00000372733 PRXQ9BXM0 1461 aa24.06■■□□□ 1.44
SDC4-201ENST00000372733 KANK4Q5T7N3 995 aaPredicted RBP24.03■■□□□ 1.44
SDC4-201ENST00000372733 CLSPNQ9HAW4 1339 aa24.03■■□□□ 1.44
SDC4-201ENST00000372733 MYT1Q01538 1121 aa24■■□□□ 1.43
SDC4-201ENST00000372733 RRBP1Q9P2E9 1410 aaKnown RBP23.92■■□□□ 1.42
SDC4-201ENST00000372733 CUX1P39880 1505 aa23.91■■□□□ 1.42
SDC4-201ENST00000372733 KIF27Q86VH2 1401 aa23.85■■□□□ 1.41
SDC4-201ENST00000372733 CUX2O14529 1486 aa23.83■■□□□ 1.4
SDC4-201ENST00000372733 CCNB3Q8WWL7 1395 aa23.82■■□□□ 1.4
SDC4-201ENST00000372733 ARHGAP35Q9NRY4 1499 aa23.82■■□□□ 1.4
SDC4-201ENST00000372733 ITGAEP38570 1179 aa23.79■■□□□ 1.4
SDC4-201ENST00000372733 SUPT16HQ9Y5B9 1047 aaKnown RBP23.78■■□□□ 1.4
SDC4-201ENST00000372733 HMGXB3Q12766 1538 aa23.76■■□□□ 1.39
SDC4-201ENST00000372733 NCAPD3P42695 1498 aa23.72■■□□□ 1.39
SDC4-201ENST00000372733 RAB3GAP2Q9H2M9 1393 aa23.68■■□□□ 1.38
SDC4-201ENST00000372733 CFTRP13569 1480 aa23.67■■□□□ 1.38
SDC4-201ENST00000372733 MAPKBP1O60336 1514 aa23.67■■□□□ 1.38
SDC4-201ENST00000372733 TIAM1Q13009 1591 aa23.62■■□□□ 1.37
SDC4-201ENST00000372733 KCNH8Q96L42 1107 aa23.61■■□□□ 1.37
SDC4-201ENST00000372733 IGF1RP08069 1367 aa23.56■■□□□ 1.36
SDC4-201ENST00000372733 SETD5Q9C0A6 1442 aa23.53■■□□□ 1.36
SDC4-201ENST00000372733 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
SDC4-201ENST00000372733 LRRC9Q6ZRR7 1453 aa23.52■■□□□ 1.36
SDC4-201ENST00000372733 PHLDB1Q86UU1 1377 aa23.52■■□□□ 1.36
SDC4-201ENST00000372733 WDR97A6NE52 1622 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms