Protein–RNA interactions for Protein: Q9Y587

AP4S1, AP-4 complex subunit sigma-1, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4S1Q9Y587 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.47■□□□□ 0.23
AP4S1Q9Y587 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 AC105917.1-201ENST00000506637 2539 ntBASIC16.47■□□□□ 0.23
AP4S1Q9Y587 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 KRT18P29-201ENST00000397031 1267 ntBASIC16.47■□□□□ 0.23
AP4S1Q9Y587 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
AP4S1Q9Y587 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 AC063926.3-201ENST00000624734 5658 ntBASIC16.46■□□□□ 0.23
AP4S1Q9Y587 KRT8P9-201ENST00000558927 1449 ntBASIC16.46■□□□□ 0.23
AP4S1Q9Y587 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.46■□□□□ 0.23
AP4S1Q9Y587 PARL-206ENST00000435888 1098 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 AL139327.4-201ENST00000612362 153 ntBASIC16.46■□□□□ 0.23
AP4S1Q9Y587 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
AP4S1Q9Y587 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
AP4S1Q9Y587 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
AP4S1Q9Y587 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
AP4S1Q9Y587 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
AP4S1Q9Y587 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
AP4S1Q9Y587 SLC25A1P3-201ENST00000395415 828 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms