Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLPTM1O96005 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CLPTM1O96005 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
CLPTM1O96005 MESTP1-201ENST00000404287 994 ntBASIC16.54■□□□□ 0.24
CLPTM1O96005 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.54■□□□□ 0.24
CLPTM1O96005 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 Z85996.1-201ENST00000494644 937 ntBASIC16.54■□□□□ 0.24
CLPTM1O96005 AC116562.2-201ENST00000507042 360 ntBASIC16.54■□□□□ 0.24
CLPTM1O96005 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CLPTM1O96005 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.54■□□□□ 0.24
CLPTM1O96005 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.54■□□□□ 0.24
CLPTM1O96005 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.54■□□□□ 0.24
CLPTM1O96005 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
CLPTM1O96005 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CLPTM1O96005 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLPTM1O96005 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AC092068.3-201ENST00000587894 2016 ntBASIC16.53■□□□□ 0.24
CLPTM1O96005 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.53■□□□□ 0.24
CLPTM1O96005 B3GAT3P1-201ENST00000471720 806 ntBASIC16.53■□□□□ 0.24
CLPTM1O96005 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AC026271.3-201ENST00000571884 352 ntBASIC16.53■□□□□ 0.24
CLPTM1O96005 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.53■□□□□ 0.24
CLPTM1O96005 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CLPTM1O96005 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.53■□□□□ 0.24
CLPTM1O96005 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLPTM1O96005 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLPTM1O96005 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms