Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HES6-204ENST00000409182 863 ntTSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 AC105265.2-201ENST00000467189 838 ntBASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CDV3P1-201ENST00000471403 739 ntBASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 AL358852.1-201ENST00000623174 1268 ntBASIC10.89□□□□□ -0.67
LINC00643Q86TS7 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 RHBDF1P1-201ENST00000427504 1941 ntBASIC10.88□□□□□ -0.67
LINC00643Q86TS7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
LINC00643Q86TS7 CNTNAP3P2-201ENST00000617175 3861 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 GAS2L1P1-201ENST00000420145 1480 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 AC006538.1-201ENST00000567905 1585 ntBASIC10.87□□□□□ -0.67
LINC00643Q86TS7 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
LINC00643Q86TS7 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC10.87□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms