RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 PELP1Q8IZL8 1130 aaKnown RBP22.79■■□□□ 1.24
CSPG4-201ENST00000308508 DCAF8L2P0C7V8 631 aa22.73■■□□□ 1.23
CSPG4-201ENST00000308508 SUPT5HO00267 1087 aaKnown RBP21.91■■□□□ 1.1
CSPG4-201ENST00000308508 ERICH6Q7L0X2 663 aa21.77■■□□□ 1.08
CSPG4-201ENST00000308508 MYT1Q01538 1121 aa21.77■■□□□ 1.08
CSPG4-201ENST00000308508 CCER1Q8TC90 406 aaPredicted RBP21.7■■□□□ 1.06
CSPG4-201ENST00000308508 CENPBP07199 599 aaPredicted RBP21.53■■□□□ 1.04
CSPG4-201ENST00000308508 APLP2Q06481 763 aa21.48■■□□□ 1.03
CSPG4-201ENST00000308508 EHMT2Q96KQ7 1210 aa21.41■■□□□ 1.02
CSPG4-201ENST00000308508 ZEB1P37275 1124 aaPredicted RBP21.2■□□□□ 0.99
CSPG4-201ENST00000308508 SHROOM4Q9ULL8 1493 aa21.19■□□□□ 0.98
CSPG4-201ENST00000308508 PCGF6Q9BYE7 350 aa21.12■□□□□ 0.97
CSPG4-201ENST00000308508 NEFLP07196 543 aa21.07■□□□□ 0.96
CSPG4-201ENST00000308508 FAM9AQ8IZU1 332 aaPredicted RBP21.01■□□□□ 0.95
CSPG4-201ENST00000308508 TTBK1Q5TCY1 1321 aaPredicted RBP20.84■□□□□ 0.93
CSPG4-201ENST00000308508 YTHDC1Q96MU7 727 aaKnown RBP20.75■□□□□ 0.91
CSPG4-201ENST00000308508 NISCHQ9Y2I1 1504 aa20.73■□□□□ 0.91
CSPG4-201ENST00000308508 DAXXQ9UER7 740 aaPredicted RBP20.68■□□□□ 0.9
CSPG4-201ENST00000308508 RANGAP1P46060 587 aaPredicted RBP20.38■□□□□ 0.85
CSPG4-201ENST00000308508 ATP1B4Q9UN42 357 aaPredicted RBP20.36■□□□□ 0.85
CSPG4-201ENST00000308508 TRIM41Q8WV44 630 aa20.34■□□□□ 0.85
CSPG4-201ENST00000308508 RTL5Q5HYW3 569 aaPredicted RBP20.28■□□□□ 0.84
CSPG4-201ENST00000308508 UBTFP17480 764 aaKnown RBP20.23■□□□□ 0.83
CSPG4-201ENST00000308508 ZNF316A6NFI3 1004 aaPredicted RBP20.15■□□□□ 0.82
CSPG4-201ENST00000308508 TRIM26Q12899 539 aaPredicted RBP20.14■□□□□ 0.81
CSPG4-201ENST00000308508 HRCP23327 699 aa20.09■□□□□ 0.81
CSPG4-201ENST00000308508 CLSPNQ9HAW4 1339 aa19.91■□□□□ 0.78
CSPG4-201ENST00000308508 POLR3GLQ9BT43 218 aa19.91■□□□□ 0.78
CSPG4-201ENST00000308508 PPARGC1BQ86YN6 1023 aaKnown RBP19.86■□□□□ 0.77
CSPG4-201ENST00000308508 DIEXFQ68CQ4 756 aaKnown RBP19.73■□□□□ 0.75
CSPG4-201ENST00000308508 ITGAEP38570 1179 aa19.68■□□□□ 0.74
CSPG4-201ENST00000308508 CNGB1Q14028 1251 aaPredicted RBP19.64■□□□□ 0.73
CSPG4-201ENST00000308508 CDK11AQ9UQ88 783 aaPredicted RBP19.62■□□□□ 0.73
CSPG4-201ENST00000308508 MYT1LQ9UL68 1186 aa19.59■□□□□ 0.73
CSPG4-201ENST00000308508 HNRNPUL2Q1KMD3 747 aaKnown RBP19.55■□□□□ 0.72
CSPG4-201ENST00000308508 SLC4A1APQ9BWU0 796 aaKnown RBP19.55■□□□□ 0.72
CSPG4-201ENST00000308508 GTF3C3Q9Y5Q9 886 aa19.51■□□□□ 0.71
CSPG4-201ENST00000308508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.48■□□□□ 0.71
CSPG4-201ENST00000308508 ZBTB47Q9UFB7 747 aaPredicted RBP19.46■□□□□ 0.71
CSPG4-201ENST00000308508 GLIPR1L2Q4G1C9 344 aa19.46■□□□□ 0.71
CSPG4-201ENST00000308508 BCANQ96GW7 911 aa19.44■□□□□ 0.7
CSPG4-201ENST00000308508 ANP32AP39687 249 aaKnown RBP19.39■□□□□ 0.69
CSPG4-201ENST00000308508 EIF5BO60841 1220 aaKnown RBP19.37■□□□□ 0.69
CSPG4-201ENST00000308508 ANP32CO43423 234 aa19.34■□□□□ 0.69
CSPG4-201ENST00000308508 ANP32BQ92688 251 aaKnown RBP19.32■□□□□ 0.68
CSPG4-201ENST00000308508 LOC105371045A0A1W2PR82 267 aa19.3■□□□□ 0.68
CSPG4-201ENST00000308508 CHIC1Q5VXU3 224 aa19.24■□□□□ 0.67
CSPG4-201ENST00000308508 CANXP27824 592 aaKnown RBP19.23■□□□□ 0.67
CSPG4-201ENST00000308508 FAM50AQ14320 339 aaKnown RBP19.14■□□□□ 0.66
CSPG4-201ENST00000308508 ACIN1Q9UKV3 1341 aaKnown RBP19.14■□□□□ 0.65
CSPG4-201ENST00000308508 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
CSPG4-201ENST00000308508 TRIM52Q96A61 297 aa19.11■□□□□ 0.65
CSPG4-201ENST00000308508 NPM2Q86SE8 214 aaKnown RBP19.07■□□□□ 0.64
CSPG4-201ENST00000308508 HSP90AA1P07900 732 aaKnown RBP19.04■□□□□ 0.64
CSPG4-201ENST00000308508 NEFMP07197 916 aa19.03■□□□□ 0.64
CSPG4-201ENST00000308508 BCL11AQ9H165 835 aa19.01■□□□□ 0.63
CSPG4-201ENST00000308508 UPF2Q9HAU5 1272 aaKnown RBP19■□□□□ 0.63
CSPG4-201ENST00000308508 SLC24A1O60721 1099 aa18.95■□□□□ 0.62
CSPG4-201ENST00000308508 ZNF326Q5BKZ1 582 aaKnown RBP18.95■□□□□ 0.62
CSPG4-201ENST00000308508 FKBP8Q14318 412 aa18.85■□□□□ 0.61
CSPG4-201ENST00000308508 NBR1Q14596 966 aa18.82■□□□□ 0.6
CSPG4-201ENST00000308508 TNNT2P45379 298 aaPredicted RBP18.74■□□□□ 0.59
CSPG4-201ENST00000308508 ARXQ96QS3 562 aa18.67■□□□□ 0.58
CSPG4-201ENST00000308508 CCDC136Q96JN2 1154 aa18.66■□□□□ 0.58
CSPG4-201ENST00000308508 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.65■□□□□ 0.58
CSPG4-201ENST00000308508 HNRNPUQ00839 825 aaKnown RBP eCLIP18.65■□□□□ 0.58
CSPG4-201ENST00000308508 TRIM44Q96DX7 344 aaPredicted RBP18.63■□□□□ 0.57
CSPG4-201ENST00000308508 ANP32EQ9BTT0 268 aa18.63■□□□□ 0.57
CSPG4-201ENST00000308508 CDK11BP21127 795 aaKnown RBP18.61■□□□□ 0.57
CSPG4-201ENST00000308508 DDRGK1Q96HY6 314 aa18.56■□□□□ 0.56
CSPG4-201ENST00000308508 BECN1Q14457 450 aa18.53■□□□□ 0.56
CSPG4-201ENST00000308508 TONSLQ96HA7 1378 aa18.52■□□□□ 0.56
CSPG4-201ENST00000308508 FAM9BQ8IZU0 186 aa18.52■□□□□ 0.56
CSPG4-201ENST00000308508 NCLP19338 710 aaKnown RBP18.48■□□□□ 0.55
CSPG4-201ENST00000308508 GOLGA6L22H0YM25 854 aa18.47■□□□□ 0.55
CSPG4-201ENST00000308508 ERICH6BQ5W0A0 696 aa18.45■□□□□ 0.54
CSPG4-201ENST00000308508 TMC1Q8TDI8 760 aa18.44■□□□□ 0.54
CSPG4-201ENST00000308508 MYH16Q9H6N6 1097 aa18.43■□□□□ 0.54
CSPG4-201ENST00000308508 DDX10Q13206 875 aaKnown RBP18.41■□□□□ 0.54
CSPG4-201ENST00000308508 WDR43Q15061 677 aaKnown RBP eCLIP18.38■□□□□ 0.53
CSPG4-201ENST00000308508 SALL2Q9Y467 1007 aaPredicted RBP18.38■□□□□ 0.53
CSPG4-201ENST00000308508 SCAF1Q9H7N4 1312 aaKnown RBP18.37■□□□□ 0.53
CSPG4-201ENST00000308508 DNTTIP2Q5QJE6 756 aaKnown RBP18.37■□□□□ 0.53
CSPG4-201ENST00000308508 PTMAP06454 111 aaKnown RBP18.37■□□□□ 0.53
CSPG4-201ENST00000308508 NAP1L5Q96NT1 182 aaPredicted RBP18.34■□□□□ 0.53
CSPG4-201ENST00000308508 ZRSR1Q15695 479 aaKnown RBP18.31■□□□□ 0.52
CSPG4-201ENST00000308508 PPM1GO15355 546 aaPredicted RBP18.3■□□□□ 0.52
CSPG4-201ENST00000308508 MRS2Q9HD23 443 aa18.3■□□□□ 0.52
CSPG4-201ENST00000308508 DCAF1Q9Y4B6 1507 aa18.28■□□□□ 0.52
CSPG4-201ENST00000308508 ZNF777Q9ULD5 760 aaPredicted RBP18.26■□□□□ 0.51
CSPG4-201ENST00000308508 IRX6P78412 446 aaPredicted RBP18.24■□□□□ 0.51
CSPG4-201ENST00000308508 FBLN2P98095 1184 aa18.22■□□□□ 0.51
CSPG4-201ENST00000308508 CASC1Q6TDU7 716 aa18.2■□□□□ 0.5
CSPG4-201ENST00000308508 ESF1Q9H501 851 aaKnown RBP18.19■□□□□ 0.5
CSPG4-201ENST00000308508 STAG3Q9UJ98 1225 aa18.19■□□□□ 0.5
CSPG4-201ENST00000308508 P3H3Q8IVL6 736 aa18.18■□□□□ 0.5
CSPG4-201ENST00000308508 GOLGA6L6A8MZA4 724 aa18.18■□□□□ 0.5
CSPG4-201ENST00000308508 CSRNP3Q8WYN3 585 aa18.16■□□□□ 0.5
CSPG4-201ENST00000308508 CHGAP10645 457 aaKnown RBP18.15■□□□□ 0.5
CSPG4-201ENST00000308508 MIER1Q8N108 512 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms