Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.43■■□□□ 1.02
LIME1Q9H400 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIME1Q9H400 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LIME1Q9H400 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIME1Q9H400 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
LIME1Q9H400 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIME1Q9H400 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
LIME1Q9H400 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
LIME1Q9H400 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
LIME1Q9H400 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC21.41■■□□□ 1.02
LIME1Q9H400 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.41■■□□□ 1.02
LIME1Q9H400 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIME1Q9H400 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LIME1Q9H400 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC21.41■■□□□ 1.02
LIME1Q9H400 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LIME1Q9H400 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
LIME1Q9H400 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.4■■□□□ 1.02
LIME1Q9H400 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LIME1Q9H400 RP9P-202ENST00000450133 1212 ntBASIC21.4■■□□□ 1.02
LIME1Q9H400 AC093536.1-201ENST00000569153 554 ntBASIC21.4■■□□□ 1.02
LIME1Q9H400 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
LIME1Q9H400 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
LIME1Q9H400 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.4■■□□□ 1.02
LIME1Q9H400 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
LIME1Q9H400 AC103834.1-201ENST00000520383 144 ntBASIC21.39■■□□□ 1.01
LIME1Q9H400 AC025884.2-201ENST00000553429 711 ntBASIC21.39■■□□□ 1.01
LIME1Q9H400 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LIME1Q9H400 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LIME1Q9H400 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIME1Q9H400 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIME1Q9H400 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.38■■□□□ 1.01
LIME1Q9H400 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIME1Q9H400 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LIME1Q9H400 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
LIME1Q9H400 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.37■■□□□ 1.01
LIME1Q9H400 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 THA1P-201ENST00000590384 1145 ntBASIC21.37■■□□□ 1.01
LIME1Q9H400 PVT1_1.1-201ENST00000615125 194 ntBASIC21.37■■□□□ 1.01
LIME1Q9H400 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
LIME1Q9H400 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.37■■□□□ 1.01
LIME1Q9H400 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIME1Q9H400 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.37■■□□□ 1.01
LIME1Q9H400 AC100797.4-201ENST00000631653 1827 ntBASIC21.36■■□□□ 1.01
LIME1Q9H400 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIME1Q9H400 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIME1Q9H400 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIME1Q9H400 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.36■■□□□ 1.01
LIME1Q9H400 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC21.36■■□□□ 1.01
LIME1Q9H400 AC139795.1-202ENST00000500444 432 ntBASIC21.36■■□□□ 1.01
LIME1Q9H400 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
LIME1Q9H400 RAP2CP1-202ENST00000605179 643 ntBASIC21.36■■□□□ 1.01
LIME1Q9H400 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
LIME1Q9H400 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.36■■□□□ 1.01
LIME1Q9H400 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIME1Q9H400 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LIME1Q9H400 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIME1Q9H400 YBX1P4-201ENST00000392794 808 ntBASIC21.35■■□□□ 1.01
LIME1Q9H400 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.35■■□□□ 1.01
LIME1Q9H400 AC074183.2-201ENST00000623112 922 ntBASIC21.35■■□□□ 1.01
LIME1Q9H400 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIME1Q9H400 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.35■■□□□ 1.01
LIME1Q9H400 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIME1Q9H400 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
LIME1Q9H400 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.35■■□□□ 1.01
LIME1Q9H400 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LIME1Q9H400 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIME1Q9H400 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIME1Q9H400 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC21.34■■□□□ 1.01
LIME1Q9H400 LINC01003-201ENST00000564834 1764 ntBASIC21.33■■□□□ 1.01
LIME1Q9H400 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
LIME1Q9H400 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.33■■□□□ 1.01
LIME1Q9H400 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LIME1Q9H400 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIME1Q9H400 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.33■■□□□ 1.01
LIME1Q9H400 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.33■■□□□ 1.01
LIME1Q9H400 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
LIME1Q9H400 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LIME1Q9H400 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIME1Q9H400 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LIME1Q9H400 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIME1Q9H400 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.32■■□□□ 1
LIME1Q9H400 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.32■■□□□ 1
LIME1Q9H400 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC21.32■■□□□ 1
LIME1Q9H400 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIME1Q9H400 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.32■■□□□ 1
LIME1Q9H400 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIME1Q9H400 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LIME1Q9H400 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIME1Q9H400 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC21.31■■□□□ 1
LIME1Q9H400 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.31■■□□□ 1
LIME1Q9H400 MIR6765-201ENST00000614092 87 ntBASIC21.31■■□□□ 1
LIME1Q9H400 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LIME1Q9H400 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.31■■□□□ 1
LIME1Q9H400 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
LIME1Q9H400 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms