Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.92■□□□□ 0.62
CCDC140Q96MF4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CCDC140Q96MF4 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC140Q96MF4 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CCDC140Q96MF4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.92■□□□□ 0.62
CCDC140Q96MF4 AC092803.2-201ENST00000564287 1899 ntBASIC18.92■□□□□ 0.62
CCDC140Q96MF4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CCDC140Q96MF4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 GPX1-201ENST00000419349 1106 ntBASIC18.9■□□□□ 0.62
CCDC140Q96MF4 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 AC025884.2-201ENST00000553429 711 ntBASIC18.9■□□□□ 0.62
CCDC140Q96MF4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC18.9■□□□□ 0.62
CCDC140Q96MF4 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CCDC140Q96MF4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC140Q96MF4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC140Q96MF4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC140Q96MF4 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
CCDC140Q96MF4 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC18.89■□□□□ 0.61
CCDC140Q96MF4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC140Q96MF4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC140Q96MF4 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC140Q96MF4 AC145676.1-201ENST00000514988 2004 ntBASIC18.88■□□□□ 0.61
CCDC140Q96MF4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC140Q96MF4 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC140Q96MF4 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 ECEL1P2-201ENST00000461596 1295 ntBASIC18.87■□□□□ 0.61
CCDC140Q96MF4 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC140Q96MF4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC140Q96MF4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC140Q96MF4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC140Q96MF4 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.86■□□□□ 0.61
CCDC140Q96MF4 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC140Q96MF4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC140Q96MF4 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 SMPD5-203ENST00000639008 1464 ntBASIC18.85■□□□□ 0.61
CCDC140Q96MF4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC140Q96MF4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 DUSP8P4-201ENST00000399538 1761 ntBASIC18.84■□□□□ 0.61
CCDC140Q96MF4 REST-210ENST00000638187 1334 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 PFN2-211ENST00000489155 636 ntTSL 4 BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC140Q96MF4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC140Q96MF4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC140Q96MF4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC18.83■□□□□ 0.6
CCDC140Q96MF4 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 ERN1-208ENST00000606895 2068 ntBASIC18.82■□□□□ 0.6
CCDC140Q96MF4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 MIR3960-201ENST00000583311 91 ntBASIC18.82■□□□□ 0.6
CCDC140Q96MF4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC140Q96MF4 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC140Q96MF4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC140Q96MF4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC18.79■□□□□ 0.6
CCDC140Q96MF4 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms