Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
SLC44A3Q8N4M1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SLC44A3Q8N4M1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
SLC44A3Q8N4M1 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.32■■□□□ 1.64
SLC44A3Q8N4M1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 AC008406.3-201ENST00000620001 1374 ntBASIC25.31■■□□□ 1.64
SLC44A3Q8N4M1 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SLC44A3Q8N4M1 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
SLC44A3Q8N4M1 LONRF2P2-201ENST00000439212 571 ntBASIC25.29■■□□□ 1.64
SLC44A3Q8N4M1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC25.29■■□□□ 1.64
SLC44A3Q8N4M1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SLC44A3Q8N4M1 RPS2P7-201ENST00000447334 885 ntBASIC25.28■■□□□ 1.64
SLC44A3Q8N4M1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.28■■□□□ 1.64
SLC44A3Q8N4M1 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SLC44A3Q8N4M1 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SLC44A3Q8N4M1 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SLC44A3Q8N4M1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.27■■□□□ 1.64
SLC44A3Q8N4M1 MIR935-201ENST00000401179 91 ntBASIC25.27■■□□□ 1.64
SLC44A3Q8N4M1 WHAMMP3-201ENST00000611636 1609 ntBASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SLC44A3Q8N4M1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SLC44A3Q8N4M1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SLC44A3Q8N4M1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SLC44A3Q8N4M1 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
SLC44A3Q8N4M1 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC25.24■■□□□ 1.63
SLC44A3Q8N4M1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.24■■□□□ 1.63
SLC44A3Q8N4M1 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SLC44A3Q8N4M1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SLC44A3Q8N4M1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC25.23■■□□□ 1.63
SLC44A3Q8N4M1 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SLC44A3Q8N4M1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.22■■□□□ 1.63
SLC44A3Q8N4M1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SLC44A3Q8N4M1 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.21■■□□□ 1.63
SLC44A3Q8N4M1 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SLC44A3Q8N4M1 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SLC44A3Q8N4M1 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SLC44A3Q8N4M1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SLC44A3Q8N4M1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC25.2■■□□□ 1.63
SLC44A3Q8N4M1 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
SLC44A3Q8N4M1 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SLC44A3Q8N4M1 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.2■■□□□ 1.62
SLC44A3Q8N4M1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SLC44A3Q8N4M1 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SLC44A3Q8N4M1 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
SLC44A3Q8N4M1 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 PEMT-206ENST00000435340 960 ntTSL 5 BASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 KRT125P-201ENST00000546827 989 ntBASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
SLC44A3Q8N4M1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
SLC44A3Q8N4M1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
SLC44A3Q8N4M1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
SLC44A3Q8N4M1 MIR4787-201ENST00000607364 84 ntBASIC25.18■■□□□ 1.62
SLC44A3Q8N4M1 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SLC44A3Q8N4M1 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
SLC44A3Q8N4M1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
SLC44A3Q8N4M1 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.16■■□□□ 1.62
SLC44A3Q8N4M1 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
SLC44A3Q8N4M1 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.15■■□□□ 1.62
SLC44A3Q8N4M1 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC25.14■■□□□ 1.62
SLC44A3Q8N4M1 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
SLC44A3Q8N4M1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
SLC44A3Q8N4M1 BX664725.1-201ENST00000438252 379 ntBASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms