Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD3Q3KNS1 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD3Q3KNS1 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.8■■□□□ 1.4
PTCHD3Q3KNS1 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
PTCHD3Q3KNS1 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.8■■□□□ 1.4
PTCHD3Q3KNS1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
PTCHD3Q3KNS1 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
PTCHD3Q3KNS1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
PTCHD3Q3KNS1 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.76■■□□□ 1.39
PTCHD3Q3KNS1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
PTCHD3Q3KNS1 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PTCHD3Q3KNS1 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PTCHD3Q3KNS1 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 AC092296.2-201ENST00000589470 999 ntBASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC23.75■■□□□ 1.39
PTCHD3Q3KNS1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 AC092803.2-201ENST00000564287 1899 ntBASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.74■■□□□ 1.39
PTCHD3Q3KNS1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD3Q3KNS1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD3Q3KNS1 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD3Q3KNS1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCHD3Q3KNS1 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCHD3Q3KNS1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 AC145676.1-201ENST00000514988 2004 ntBASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 NTF6A-201ENST00000591175 560 ntBASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.71■■□□□ 1.39
PTCHD3Q3KNS1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PTCHD3Q3KNS1 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PTCHD3Q3KNS1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC23.7■■□□□ 1.38
PTCHD3Q3KNS1 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD3Q3KNS1 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD3Q3KNS1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD3Q3KNS1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCHD3Q3KNS1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 AL157400.5-201ENST00000507624 621 ntBASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PTCHD3Q3KNS1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 ECEL1P2-201ENST00000461596 1295 ntBASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PTCHD3Q3KNS1 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC23.67■■□□□ 1.38
PTCHD3Q3KNS1 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
PTCHD3Q3KNS1 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
PTCHD3Q3KNS1 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC23.66■■□□□ 1.38
PTCHD3Q3KNS1 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 U85056.1-201ENST00000616429 682 ntBASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 DUSP8P4-201ENST00000399538 1761 ntBASIC23.65■■□□□ 1.38
PTCHD3Q3KNS1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.64■■□□□ 1.38
PTCHD3Q3KNS1 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
PTCHD3Q3KNS1 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms