Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM4P50479 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM4P50479 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.65■□□□□ 0.9
PDLIM4P50479 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.64■□□□□ 0.9
PDLIM4P50479 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
PDLIM4P50479 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM4P50479 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM4P50479 AC010980.1-201ENST00000587192 1142 ntBASIC20.64■□□□□ 0.89
PDLIM4P50479 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDLIM4P50479 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
PDLIM4P50479 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM4P50479 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM4P50479 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.63■□□□□ 0.89
PDLIM4P50479 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM4P50479 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM4P50479 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM4P50479 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.63■□□□□ 0.89
PDLIM4P50479 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDLIM4P50479 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
PDLIM4P50479 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM4P50479 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.62■□□□□ 0.89
PDLIM4P50479 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.62■□□□□ 0.89
PDLIM4P50479 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PDLIM4P50479 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
PDLIM4P50479 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PDLIM4P50479 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM4P50479 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.61■□□□□ 0.89
PDLIM4P50479 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM4P50479 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDLIM4P50479 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM4P50479 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM4P50479 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM4P50479 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.6■□□□□ 0.89
PDLIM4P50479 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDLIM4P50479 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PDLIM4P50479 YBX1P4-201ENST00000392794 808 ntBASIC20.59■□□□□ 0.89
PDLIM4P50479 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
PDLIM4P50479 KRT8P33-201ENST00000508125 1423 ntBASIC20.59■□□□□ 0.89
PDLIM4P50479 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM4P50479 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM4P50479 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDLIM4P50479 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.58■□□□□ 0.89
PDLIM4P50479 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.58■□□□□ 0.89
PDLIM4P50479 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM4P50479 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDLIM4P50479 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM4P50479 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM4P50479 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.57■□□□□ 0.88
PDLIM4P50479 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.57■□□□□ 0.88
PDLIM4P50479 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM4P50479 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.57■□□□□ 0.88
PDLIM4P50479 AL451085.2-201ENST00000605085 799 ntBASIC20.57■□□□□ 0.88
PDLIM4P50479 AL035685.1-201ENST00000636663 812 ntBASIC20.57■□□□□ 0.88
PDLIM4P50479 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDLIM4P50479 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM4P50479 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM4P50479 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM4P50479 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM4P50479 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.56■□□□□ 0.88
PDLIM4P50479 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDLIM4P50479 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
PDLIM4P50479 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM4P50479 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM4P50479 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM4P50479 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.55■□□□□ 0.88
PDLIM4P50479 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM4P50479 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC20.55■□□□□ 0.88
PDLIM4P50479 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDLIM4P50479 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM4P50479 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM4P50479 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM4P50479 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDLIM4P50479 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM4P50479 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM4P50479 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM4P50479 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM4P50479 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDLIM4P50479 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PDLIM4P50479 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PDLIM4P50479 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.51■□□□□ 0.87
PDLIM4P50479 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM4P50479 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.51■□□□□ 0.87
PDLIM4P50479 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
PDLIM4P50479 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM4P50479 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDLIM4P50479 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM4P50479 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.5■□□□□ 0.87
PDLIM4P50479 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.5■□□□□ 0.87
PDLIM4P50479 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM4P50479 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.5■□□□□ 0.87
PDLIM4P50479 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM4P50479 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM4P50479 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDLIM4P50479 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms