Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SOX3P41225 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.8■■□□□ 1.24
SOX3P41225 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.8■■□□□ 1.24
SOX3P41225 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
SOX3P41225 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.8■■□□□ 1.24
SOX3P41225 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
SOX3P41225 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SOX3P41225 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SOX3P41225 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SOX3P41225 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SOX3P41225 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SOX3P41225 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SOX3P41225 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SOX3P41225 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC22.78■■□□□ 1.24
SOX3P41225 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SOX3P41225 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SOX3P41225 REST-210ENST00000638187 1334 ntTSL 5 BASIC22.78■■□□□ 1.24
SOX3P41225 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SOX3P41225 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC22.77■■□□□ 1.24
SOX3P41225 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SOX3P41225 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.77■■□□□ 1.24
SOX3P41225 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.77■■□□□ 1.24
SOX3P41225 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SOX3P41225 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SOX3P41225 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
SOX3P41225 SMPD5-203ENST00000639008 1464 ntBASIC22.77■■□□□ 1.24
SOX3P41225 HYI-213ENST00000583037 1322 ntTSL 5 BASIC22.77■■□□□ 1.24
SOX3P41225 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
SOX3P41225 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.77■■□□□ 1.23
SOX3P41225 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.76■■□□□ 1.23
SOX3P41225 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SOX3P41225 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC22.76■■□□□ 1.23
SOX3P41225 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.76■■□□□ 1.23
SOX3P41225 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.76■■□□□ 1.23
SOX3P41225 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
SOX3P41225 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
SOX3P41225 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.76■■□□□ 1.23
SOX3P41225 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SOX3P41225 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.75■■□□□ 1.23
SOX3P41225 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.74■■□□□ 1.23
SOX3P41225 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
SOX3P41225 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC22.74■■□□□ 1.23
SOX3P41225 AC007029.1-201ENST00000604183 313 ntBASIC22.74■■□□□ 1.23
SOX3P41225 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
SOX3P41225 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
SOX3P41225 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.74■■□□□ 1.23
SOX3P41225 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SOX3P41225 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC22.73■■□□□ 1.23
SOX3P41225 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SOX3P41225 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
SOX3P41225 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.73■■□□□ 1.23
SOX3P41225 AC025884.2-201ENST00000553429 711 ntBASIC22.73■■□□□ 1.23
SOX3P41225 NTF6A-201ENST00000591175 560 ntBASIC22.73■■□□□ 1.23
SOX3P41225 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SOX3P41225 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
SOX3P41225 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SOX3P41225 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SOX3P41225 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC22.72■■□□□ 1.23
SOX3P41225 U85056.1-201ENST00000616429 682 ntBASIC22.72■■□□□ 1.23
SOX3P41225 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.72■■□□□ 1.23
SOX3P41225 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SOX3P41225 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.72■■□□□ 1.23
SOX3P41225 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SOX3P41225 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SOX3P41225 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SOX3P41225 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC22.71■■□□□ 1.23
SOX3P41225 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SOX3P41225 AL359504.2-201ENST00000605506 1601 ntBASIC22.71■■□□□ 1.23
SOX3P41225 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SOX3P41225 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
SOX3P41225 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SOX3P41225 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.7■■□□□ 1.22
SOX3P41225 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SOX3P41225 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SOX3P41225 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
SOX3P41225 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SOX3P41225 AC091060.1-201ENST00000623524 1766 ntBASIC22.68■■□□□ 1.22
SOX3P41225 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX3P41225 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.68■■□□□ 1.22
SOX3P41225 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX3P41225 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
SOX3P41225 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SOX3P41225 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SOX3P41225 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SOX3P41225 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SOX3P41225 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.66■■□□□ 1.22
SOX3P41225 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
SOX3P41225 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SOX3P41225 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SOX3P41225 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SOX3P41225 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX3P41225 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
SOX3P41225 PFN2-211ENST00000489155 636 ntTSL 4 BASIC22.65■■□□□ 1.22
SOX3P41225 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
SOX3P41225 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SOX3P41225 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SOX3P41225 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SOX3P41225 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.64■■□□□ 1.22
SOX3P41225 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.64■■□□□ 1.22
SOX3P41225 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms