Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
BRCA1P38398 KRT125P-201ENST00000546827 989 ntBASIC30.54■■■□□ 2.48
BRCA1P38398 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
BRCA1P38398 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.53■■■□□ 2.48
BRCA1P38398 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.53■■■□□ 2.48
BRCA1P38398 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
BRCA1P38398 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
BRCA1P38398 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.52■■■□□ 2.48
BRCA1P38398 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
BRCA1P38398 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
BRCA1P38398 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.51■■■□□ 2.47
BRCA1P38398 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.51■■■□□ 2.47
BRCA1P38398 AL139246.5-201ENST00000606645 996 ntBASIC30.51■■■□□ 2.47
BRCA1P38398 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
BRCA1P38398 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC30.51■■■□□ 2.47
BRCA1P38398 AC110285.6-201ENST00000617652 491 ntBASIC30.5■■■□□ 2.47
BRCA1P38398 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.5■■■□□ 2.47
BRCA1P38398 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.5■■■□□ 2.47
BRCA1P38398 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
BRCA1P38398 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
BRCA1P38398 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
BRCA1P38398 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
BRCA1P38398 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
BRCA1P38398 RPS2P7-201ENST00000447334 885 ntBASIC30.48■■■□□ 2.47
BRCA1P38398 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.48■■■□□ 2.47
BRCA1P38398 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
BRCA1P38398 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.48■■■□□ 2.47
BRCA1P38398 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
BRCA1P38398 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.47■■■□□ 2.47
BRCA1P38398 TRIR-202ENST00000588213 841 ntTSL 3 BASIC30.47■■■□□ 2.47
BRCA1P38398 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
BRCA1P38398 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.46■■■□□ 2.47
BRCA1P38398 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
BRCA1P38398 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
BRCA1P38398 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
BRCA1P38398 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
BRCA1P38398 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
BRCA1P38398 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
BRCA1P38398 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC30.45■■■□□ 2.47
BRCA1P38398 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC30.45■■■□□ 2.47
BRCA1P38398 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
BRCA1P38398 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
BRCA1P38398 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
BRCA1P38398 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.44■■■□□ 2.46
BRCA1P38398 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
BRCA1P38398 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
BRCA1P38398 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
BRCA1P38398 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
BRCA1P38398 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC30.43■■■□□ 2.46
BRCA1P38398 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
BRCA1P38398 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
BRCA1P38398 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
BRCA1P38398 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC30.42■■■□□ 2.46
BRCA1P38398 AC022616.5-201ENST00000518796 181 ntBASIC30.42■■■□□ 2.46
BRCA1P38398 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
BRCA1P38398 AP002414.2-202ENST00000590929 1450 ntBASIC30.41■■■□□ 2.46
BRCA1P38398 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.41■■■□□ 2.46
BRCA1P38398 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
BRCA1P38398 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
BRCA1P38398 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
BRCA1P38398 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC30.4■■■□□ 2.46
BRCA1P38398 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
BRCA1P38398 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.4■■■□□ 2.46
BRCA1P38398 ST7-AS1-201ENST00000456775 1889 ntBASIC30.39■■■□□ 2.46
BRCA1P38398 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.39■■■□□ 2.45
BRCA1P38398 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.38■■■□□ 2.45
BRCA1P38398 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
BRCA1P38398 WHAMMP3-201ENST00000611636 1609 ntBASIC30.38■■■□□ 2.45
BRCA1P38398 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.38■■■□□ 2.45
BRCA1P38398 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.38■■■□□ 2.45
BRCA1P38398 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
BRCA1P38398 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC30.37■■■□□ 2.45
BRCA1P38398 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC30.37■■■□□ 2.45
BRCA1P38398 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.37■■■□□ 2.45
BRCA1P38398 RARRES2P6-201ENST00000567333 442 ntBASIC30.37■■■□□ 2.45
BRCA1P38398 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
BRCA1P38398 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.36■■■□□ 2.45
BRCA1P38398 AC137630.3-201ENST00000607245 391 ntBASIC30.36■■■□□ 2.45
BRCA1P38398 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC30.36■■■□□ 2.45
BRCA1P38398 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRCA1P38398 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRCA1P38398 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.36■■■□□ 2.45
BRCA1P38398 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
BRCA1P38398 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.35■■■□□ 2.45
BRCA1P38398 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC30.35■■■□□ 2.45
BRCA1P38398 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
BRCA1P38398 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.35■■■□□ 2.45
BRCA1P38398 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
BRCA1P38398 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC30.34■■■□□ 2.45
BRCA1P38398 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
BRCA1P38398 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC30.33■■■□□ 2.45
BRCA1P38398 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.33■■■□□ 2.45
BRCA1P38398 AC021242.3-201ENST00000607598 1377 ntBASIC30.33■■■□□ 2.45
BRCA1P38398 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRCA1P38398 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
BRCA1P38398 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.32■■■□□ 2.44
BRCA1P38398 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.32■■■□□ 2.44
BRCA1P38398 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC30.31■■■□□ 2.44
BRCA1P38398 AL136116.3-201ENST00000402907 1138 ntBASIC30.31■■■□□ 2.44
BRCA1P38398 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms