Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 IGF2BP2-210ENST00000494906 918 ntTSL 59.76□□□□□ -0.851e-12■■■■■ 240.6
SF3B1O75533 POMT2-210ENST00000555675 533 ntTSL 49.49□□□□□ -0.891e-12■■■■■ 240.6
SF3B1O75533 POMT2-208ENST00000554948 565 ntTSL 48.99□□□□□ -0.971e-12■■■■■ 240.6
SF3B1O75533 ZNF174-203ENST00000571936 1586 ntAPPRIS P1 TSL 5 BASIC8.72□□□□□ -1.011e-12■■■■■ 240.6
SF3B1O75533 POMT2-203ENST00000553863 564 ntTSL 48.48□□□□□ -1.051e-12■■■■■ 240.6
SF3B1O75533 POMT2-220ENST00000557289 355 ntTSL 58.48□□□□□ -1.051e-12■■■■■ 240.6
SF3B1O75533 ZNF174-205ENST00000575752 1068 ntTSL 5 BASIC8.31□□□□□ -1.081e-12■■■■■ 240.6
SF3B1O75533 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.95□□□□□ -1.31e-12■■■■■ 240.6
SF3B1O75533 ACSL4-209ENST00000505075 390 ntTSL 34.37□□□□□ -1.711e-12■■■■■ 240.6
SF3B1O75533 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.257e-7■■■■■ 237.1
SF3B1O75533 GTPBP4-205ENST00000491635 2220 ntTSL 210.13□□□□□ -0.797e-7■■■■■ 237.1
SF3B1O75533 MCPH1-202ENST00000519221 539 ntTSL 313.96□□□□□ -0.172e-6■■■■■ 236.9
SF3B1O75533 MCPH1-204ENST00000521129 540 ntTSL 212.28□□□□□ -0.442e-6■■■■■ 236.9
SF3B1O75533 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.012e-6■■■■■ 236.9
SF3B1O75533 TMEM87A-205ENST00000562946 1430 ntTSL 29.57□□□□□ -0.886e-7■■■■■ 236.4
SF3B1O75533 TMEM87A-203ENST00000448392 3049 ntTSL 1 (best) BASIC9.24□□□□□ -0.936e-7■■■■■ 236.4
SF3B1O75533 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.016e-7■■■■■ 236.4
SF3B1O75533 TMEM87A-213ENST00000569075 1369 ntTSL 24.93□□□□□ -1.626e-7■■■■■ 236.4
SF3B1O75533 TMEM87A-208ENST00000566014 583 ntTSL 54.75□□□□□ -1.656e-7■■■■■ 236.4
SF3B1O75533 SUZ12P1-204ENST00000579526 563 ntTSL 223.59■■□□□ 1.371e-7■■■■■ 235.5
SF3B1O75533 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.777e-9■■■■■ 235.3
SF3B1O75533 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC14.07□□□□□ -0.167e-7■■■■■ 234.1
SF3B1O75533 CTTN-204ENST00000393747 1315 ntTSL 519.82■□□□□ 0.761e-6■■■■■ 232.6
SF3B1O75533 TLE3-218ENST00000559608 519 ntTSL 216.73■□□□□ 0.273e-13■■■■■ 232.6
SF3B1O75533 NDUFAF7-213ENST00000483999 711 ntTSL 514.83□□□□□ -0.042e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-205ENST00000431821 783 ntTSL 414.53□□□□□ -0.082e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-210ENST00000469831 845 ntTSL 214.46□□□□□ -0.092e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-206ENST00000432075 663 ntTSL 513.76□□□□□ -0.212e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.242e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-203ENST00000416653 473 ntTSL 313.18□□□□□ -0.32e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-202ENST00000336237 1869 ntTSL 1 (best) BASIC12.9□□□□□ -0.342e-7■■■■■ 232.6
SF3B1O75533 TLE3-207ENST00000557815 7809 ntTSL 212.48□□□□□ -0.413e-13■■■■■ 232.6
SF3B1O75533 NDUFAF7-211ENST00000474154 2974 ntTSL 210.65□□□□□ -0.72e-7■■■■■ 232.6
SF3B1O75533 NDUFAF7-209ENST00000455230 946 ntTSL 59.14□□□□□ -0.952e-7■■■■■ 232.6
SF3B1O75533 ANGPT1-206ENST00000520734 1526 ntTSL 2 BASIC8.13□□□□□ -1.112e-12■■■■■ 232.6
SF3B1O75533 NDUFAF7-207ENST00000439218 934 ntTSL 36.46□□□□□ -1.382e-7■■■■■ 232.6
SF3B1O75533 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC6.3□□□□□ -1.42e-12■■■■■ 232.6
SF3B1O75533 STAG1-204ENST00000462818 1227 ntTSL 36.28□□□□□ -1.43e-13■■■■■ 232.6
SF3B1O75533 ANGPT1-203ENST00000518386 813 ntTSL 33.84□□□□□ -1.792e-12■■■■■ 232.6
SF3B1O75533 ANGPT1-201ENST00000297450 4353 ntAPPRIS ALT1 TSL 1 (best)3.12□□□□□ -1.912e-12■■■■■ 232.6
SF3B1O75533 ANGPT1-202ENST00000517746 4322 ntAPPRIS P3 TSL 1 (best)3.01□□□□□ -1.932e-12■■■■■ 232.6
SF3B1O75533 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.081e-9■■■■■ 229.8
SF3B1O75533 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.011e-9■■■■■ 229.8
SF3B1O75533 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.5■□□□□ 0.871e-6■■■■■ 229.8
SF3B1O75533 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.4■□□□□ 0.861e-6■■■■■ 229.8
SF3B1O75533 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.841e-9■■■■■ 229.8
SF3B1O75533 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.521e-6■■■■■ 229.8
SF3B1O75533 NEURL4-206ENST00000571887 4291 ntAPPRIS ALT2 TSL 515.33■□□□□ 0.041e-9■■■■■ 229.8
SF3B1O75533 HM13-205ENST00000460225 443 ntTSL 515.16■□□□□ 0.028e-23■■■■■ 229.8
SF3B1O75533 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.151e-6■■■■■ 229.8
SF3B1O75533 HM13-210ENST00000466766 358 ntTSL 213.9□□□□□ -0.198e-23■■■■■ 229.8
SF3B1O75533 NEURL4-210ENST00000573651 1850 ntTSL 513.16□□□□□ -0.31e-9■■■■■ 229.8
SF3B1O75533 C19orf47-204ENST00000580606 803 ntAPPRIS ALT2 TSL 313.09□□□□□ -0.311e-8■■■■■ 229.8
SF3B1O75533 HM13-223ENST00000496438 699 ntTSL 513.05□□□□□ -0.328e-23■■■■■ 229.8
SF3B1O75533 NEURL4-209ENST00000573186 4431 ntTSL 511.12□□□□□ -0.631e-9■■■■■ 229.8
SF3B1O75533 HM13-224ENST00000498035 3932 ntTSL 2 BASIC8.55□□□□□ -1.048e-23■■■■■ 229.8
SF3B1O75533 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.031e-6■■■■■ 228.4
SF3B1O75533 CNOT3-210ENST00000618939 4516 ntTSL 513.96□□□□□ -0.171e-6■■■■■ 228.4
SF3B1O75533 PTOV1-203ENST00000594165 986 ntTSL 320.78■□□□□ 0.921e-6■■■■■ 228.3
SF3B1O75533 SAFB-213ENST00000592555 1360 ntTSL 519.8■□□□□ 0.769e-8■■■■■ 228.3
SF3B1O75533 SAFB-210ENST00000591991 3471 ntTSL 212.07□□□□□ -0.489e-8■■■■■ 228.3
SF3B1O75533 KCNAB2-218ENST00000493807 560 ntTSL 312.01□□□□□ -0.491e-6■■■■■ 228.3
SF3B1O75533 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.56■■□□□ 1.043e-6■■■■■ 228.2
SF3B1O75533 HSD17B12-211ENST00000636007 563 ntTSL 419.51■□□□□ 0.713e-6■■■■■ 228.2
SF3B1O75533 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.473e-6■■■■■ 228.2
SF3B1O75533 HSD17B12-206ENST00000531185 611 ntTSL 417.89■□□□□ 0.453e-6■■■■■ 228.2
SF3B1O75533 HSD17B12-205ENST00000527433 559 ntTSL 415.95■□□□□ 0.143e-6■■■■■ 228.2
SF3B1O75533 AC068205.2-203ENST00000529261 748 ntTSL 310.83□□□□□ -0.683e-6■■■■■ 228.2
SF3B1O75533 HSD17B12-214ENST00000638034 546 ntTSL 54.31□□□□□ -1.723e-6■■■■■ 228.2
SF3B1O75533 CHURC1-FNTB-203ENST00000552941 1847 ntTSL 213.94□□□□□ -0.182e-6■■■■■ 227.7
SF3B1O75533 CHURC1-FNTB-201ENST00000549987 1468 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.532e-6■■■■■ 227.7
SF3B1O75533 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.052e-6■■■■■ 226.3
SF3B1O75533 CALN1-205ENST00000431984 777 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.372e-6■■■■■ 226.3
SF3B1O75533 CALN1-202ENST00000395275 9459 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.712e-6■■■■■ 226.3
SF3B1O75533 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.382e-6■■■■■ 226.3
SF3B1O75533 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.671e-8■■■■■ 225.8
SF3B1O75533 WNT5B-208ENST00000543563 716 ntTSL 224.47■■□□□ 1.514e-6■■■■■ 225.8
SF3B1O75533 DOCK8-206ENST00000454469 2087 ntTSL 220.11■□□□□ 0.816e-9■■■■■ 225.8
SF3B1O75533 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.614e-6■■■■■ 225.8
SF3B1O75533 DOCK8-212ENST00000479404 595 ntTSL 318.83■□□□□ 0.616e-9■■■■■ 225.8
SF3B1O75533 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.514e-6■■■■■ 225.8
SF3B1O75533 SCAPER-216ENST00000565970 2388 ntTSL 517.8■□□□□ 0.444e-6■■■■■ 225.8
SF3B1O75533 DOCK8-217ENST00000524396 2206 ntTSL 516.66■□□□□ 0.266e-9■■■■■ 225.8
SF3B1O75533 C19orf47-205ENST00000580977 563 ntTSL 416.58■□□□□ 0.241e-8■■■■■ 225.8
SF3B1O75533 SCAPER-212ENST00000564590 2507 ntTSL 214.66□□□□□ -0.064e-6■■■■■ 225.8
SF3B1O75533 SCAPER-215ENST00000565507 2627 ntTSL 513.49□□□□□ -0.254e-6■■■■■ 225.8
SF3B1O75533 C19orf47-208ENST00000582783 3628 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.381e-8■■■■■ 225.8
SF3B1O75533 C19orf47-206ENST00000582006 581 ntAPPRIS ALT2 TSL 412.11□□□□□ -0.471e-8■■■■■ 225.8
SF3B1O75533 WNT5B-204ENST00000538854 510 ntTSL 49.22□□□□□ -0.934e-6■■■■■ 225.8
SF3B1O75533 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.124e-6■■■■■ 225.8
SF3B1O75533 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7□□□□□ -1.294e-6■■■■■ 225.8
SF3B1O75533 SCAPER-201ENST00000303521 5438 ntTSL 26.67□□□□□ -1.344e-6■■■■■ 225.8
SF3B1O75533 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.434e-6■■■■■ 225.8
SF3B1O75533 GTF3C3-201ENST00000263956 4282 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.013e-7■■■■■ 225.4
SF3B1O75533 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.793e-6■■■■■ 224.9
SF3B1O75533 RNF11-203ENST00000494873 953 ntTSL 325.29■■□□□ 1.642e-6■■■■■ 224
SF3B1O75533 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.572e-9■■■■■ 224
SF3B1O75533 STXBP1-214ENST00000635950 2771 ntTSL 520.79■□□□□ 0.921e-9■■■■■ 224
SF3B1O75533 FN3KRP-207ENST00000574832 1422 ntTSL 220.69■□□□□ 0.95e-8■■■■■ 224
SF3B1O75533 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.95e-8■■■■■ 224
Retrieved 100 of 46,956 protein–RNA pairs in 4270.7 ms