RNA–Protein interactions for RNA: ENST00000263956.7

GTF3C3-201, Transcript of general transcription factor IIIC subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C3, Length 4,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-201ENST00000263956 NISCHQ9Y2I1 1504 aa17.09■□□□□ 0.33
GTF3C3-201ENST00000263956 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
GTF3C3-201ENST00000263956 SHROOM4Q9ULL8 1493 aa14.71□□□□□ -0.05
GTF3C3-201ENST00000263956 ABCC9O60706 1549 aa14.68□□□□□ -0.06
GTF3C3-201ENST00000263956 CCDC180Q9P1Z9 1646 aa14.63□□□□□ -0.07
GTF3C3-201ENST00000263956 SUPT5HO00267 1087 aaKnown RBP14.41□□□□□ -0.1
GTF3C3-201ENST00000263956 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
GTF3C3-201ENST00000263956 PABPN1Q86U42 306 aaKnown RBP eCLIP14.1□□□□□ -0.15
GTF3C3-201ENST00000263956 RB1CC1Q8TDY2 1594 aa14.02□□□□□ -0.17
GTF3C3-201ENST00000263956 NACADO15069 1562 aa13.99□□□□□ -0.17
GTF3C3-201ENST00000263956 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
GTF3C3-201ENST00000263956 DCAF1Q9Y4B6 1507 aa13.88□□□□□ -0.19
GTF3C3-201ENST00000263956 MYO15BQ96JP2 1530 aa13.73□□□□□ -0.21
GTF3C3-201ENST00000263956 TRIM41Q8WV44 630 aa13.53□□□□□ -0.24
GTF3C3-201ENST00000263956 FAM9AQ8IZU1 332 aaPredicted RBP13.43□□□□□ -0.26
GTF3C3-201ENST00000263956 EHMT2Q96KQ7 1210 aa13.43□□□□□ -0.26
GTF3C3-201ENST00000263956 BAZ1AQ9NRL2 1556 aaPredicted RBP13.34□□□□□ -0.27
GTF3C3-201ENST00000263956 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.27
GTF3C3-201ENST00000263956 CECR2Q9BXF3 1484 aa13.33□□□□□ -0.28
GTF3C3-201ENST00000263956 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
GTF3C3-201ENST00000263956 CHIC1Q5VXU3 224 aa13.22□□□□□ -0.29
GTF3C3-201ENST00000263956 UBTFP17480 764 aaKnown RBP13.18□□□□□ -0.3
GTF3C3-201ENST00000263956 MROH2BQ7Z745 1585 aa13.18□□□□□ -0.3
GTF3C3-201ENST00000263956 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
GTF3C3-201ENST00000263956 APLP2Q06481 763 aa13.14□□□□□ -0.31
GTF3C3-201ENST00000263956 RANGAP1P46060 587 aaPredicted RBP13.13□□□□□ -0.31
GTF3C3-201ENST00000263956 ATAD2BQ9ULI0 1458 aa13.06□□□□□ -0.32
GTF3C3-201ENST00000263956 SMARCA4P51532 1647 aa13.05□□□□□ -0.32
GTF3C3-201ENST00000263956 BICRAQ9NZM4 1560 aa13.02□□□□□ -0.33
GTF3C3-201ENST00000263956 EIF4G1Q04637 1599 aaKnown RBP13.01□□□□□ -0.33
GTF3C3-201ENST00000263956 ATP1B4Q9UN42 357 aaPredicted RBP12.98□□□□□ -0.33
GTF3C3-201ENST00000263956 WIZO95785 1651 aa12.97□□□□□ -0.33
GTF3C3-201ENST00000263956 TOP2AP11388 1531 aaKnown RBP12.95□□□□□ -0.34
GTF3C3-201ENST00000263956 CCDC88BA6NC98 1476 aa12.93□□□□□ -0.34
GTF3C3-201ENST00000263956 ERCC6Q03468 1493 aa12.93□□□□□ -0.34
GTF3C3-201ENST00000263956 NCAPD3P42695 1498 aa12.93□□□□□ -0.34
GTF3C3-201ENST00000263956 FBLN2P98095 1184 aa12.92□□□□□ -0.34
GTF3C3-201ENST00000263956 PDS5BQ9NTI5 1447 aa12.88□□□□□ -0.35
GTF3C3-201ENST00000263956 CADPSQ9ULU8 1353 aa12.88□□□□□ -0.35
GTF3C3-201ENST00000263956 LOC105371045A0A1W2PR82 267 aa12.88□□□□□ -0.35
GTF3C3-201ENST00000263956 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
GTF3C3-201ENST00000263956 UNC13AQ9UPW8 1703 aa12.87□□□□□ -0.35
GTF3C3-201ENST00000263956 TTBK1Q5TCY1 1321 aaPredicted RBP12.86□□□□□ -0.35
GTF3C3-201ENST00000263956 WRNQ14191 1432 aaPredicted RBP eCLIP12.85□□□□□ -0.35
GTF3C3-201ENST00000263956 CC2D2AQ9P2K1 1620 aa12.84□□□□□ -0.35
GTF3C3-201ENST00000263956 DNAJC5BQ9UF47 199 aa12.78□□□□□ -0.36
GTF3C3-201ENST00000263956 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.78□□□□□ -0.36
GTF3C3-201ENST00000263956 HNRNPUL2Q1KMD3 747 aaKnown RBP12.78□□□□□ -0.36
GTF3C3-201ENST00000263956 HMGXB3Q12766 1538 aa12.75□□□□□ -0.37
GTF3C3-201ENST00000263956 CHMP7Q8WUX9 453 aaPredicted RBP12.71□□□□□ -0.37
GTF3C3-201ENST00000263956 CEP164Q9UPV0 1460 aa12.7□□□□□ -0.38
GTF3C3-201ENST00000263956 KIF27Q86VH2 1401 aa12.68□□□□□ -0.38
GTF3C3-201ENST00000263956 FANCD2Q9BXW9 1451 aa12.68□□□□□ -0.38
GTF3C3-201ENST00000263956 EEA1Q15075 1411 aa12.67□□□□□ -0.38
GTF3C3-201ENST00000263956 SOGA1O94964 1423 aa12.62□□□□□ -0.39
GTF3C3-201ENST00000263956 P3H3Q8IVL6 736 aa12.62□□□□□ -0.39
GTF3C3-201ENST00000263956 PPARGC1BQ86YN6 1023 aaKnown RBP12.62□□□□□ -0.39
GTF3C3-201ENST00000263956 PEG3Q9GZU2 1588 aa12.61□□□□□ -0.39
GTF3C3-201ENST00000263956 ABCC8Q09428 1581 aa12.61□□□□□ -0.39
GTF3C3-201ENST00000263956 CUX2O14529 1486 aa12.6□□□□□ -0.39
GTF3C3-201ENST00000263956 CFTRP13569 1480 aa12.6□□□□□ -0.39
GTF3C3-201ENST00000263956 NESP48681 1621 aa12.56□□□□□ -0.4
GTF3C3-201ENST00000263956 TDRD9Q8NDG6 1382 aaKnown RBP12.55□□□□□ -0.4
GTF3C3-201ENST00000263956 PCGF6Q9BYE7 350 aa12.55□□□□□ -0.4
GTF3C3-201ENST00000263956 CARMIL1Q5VZK9 1371 aa12.51□□□□□ -0.41
GTF3C3-201ENST00000263956 MYT1LQ9UL68 1186 aa12.5□□□□□ -0.41
GTF3C3-201ENST00000263956 GOLGA3Q08378 1498 aa12.5□□□□□ -0.41
GTF3C3-201ENST00000263956 NPM1P06748 294 aaKnown RBP eCLIP12.48□□□□□ -0.41
GTF3C3-201ENST00000263956 CDK11AQ9UQ88 783 aaPredicted RBP12.48□□□□□ -0.41
GTF3C3-201ENST00000263956 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
GTF3C3-201ENST00000263956 ARID3CA6NKF2 412 aa12.47□□□□□ -0.41
GTF3C3-201ENST00000263956 MRC2Q9UBG0 1479 aa12.46□□□□□ -0.42
GTF3C3-201ENST00000263956 ITGAEP38570 1179 aa12.45□□□□□ -0.42
GTF3C3-201ENST00000263956 FGD5Q6ZNL6 1462 aa12.44□□□□□ -0.42
GTF3C3-201ENST00000263956 TRIM26Q12899 539 aaPredicted RBP12.43□□□□□ -0.42
GTF3C3-201ENST00000263956 CLIP1P30622 1438 aa12.42□□□□□ -0.42
GTF3C3-201ENST00000263956 TNIKQ9UKE5 1360 aa12.4□□□□□ -0.43
GTF3C3-201ENST00000263956 RAD54L2Q9Y4B4 1467 aa12.39□□□□□ -0.43
GTF3C3-201ENST00000263956 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
GTF3C3-201ENST00000263956 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
GTF3C3-201ENST00000263956 GAPVD1Q14C86 1478 aa12.35□□□□□ -0.43
GTF3C3-201ENST00000263956 CCER1Q8TC90 406 aaPredicted RBP12.34□□□□□ -0.43
GTF3C3-201ENST00000263956 CEP162Q5TB80 1403 aa12.34□□□□□ -0.43
GTF3C3-201ENST00000263956 IFT140Q96RY7 1462 aa12.33□□□□□ -0.44
GTF3C3-201ENST00000263956 RAPGEF2Q9Y4G8 1499 aa12.33□□□□□ -0.44
GTF3C3-201ENST00000263956 DNMBPQ6XZF7 1577 aa12.32□□□□□ -0.44
GTF3C3-201ENST00000263956 AQRO60306 1485 aaKnown RBP eCLIP12.32□□□□□ -0.441e-6■■■■□ 26.1
GTF3C3-201ENST00000263956 CUX1P39880 1505 aa12.31□□□□□ -0.44
GTF3C3-201ENST00000263956 POLA1P09884 1462 aaPredicted RBP12.3□□□□□ -0.44
GTF3C3-201ENST00000263956 IGF1RP08069 1367 aa12.3□□□□□ -0.44
GTF3C3-201ENST00000263956 CARMIL2Q6F5E8 1435 aa12.29□□□□□ -0.44
GTF3C3-201ENST00000263956 SYNJ1O43426 1573 aa12.29□□□□□ -0.44
GTF3C3-201ENST00000263956 RUSC2Q8N2Y8 1516 aa12.29□□□□□ -0.44
GTF3C3-201ENST00000263956 OSCARQ8IYS5 282 aa12.28□□□□□ -0.44
GTF3C3-201ENST00000263956 GRIN2BQ13224 1484 aa12.27□□□□□ -0.44
GTF3C3-201ENST00000263956 TOP2BQ02880 1626 aa12.27□□□□□ -0.44
GTF3C3-201ENST00000263956 PLEKHD1A6NEE1 506 aa12.27□□□□□ -0.44
GTF3C3-201ENST00000263956 ZNF777Q9ULD5 760 aaPredicted RBP12.27□□□□□ -0.44
GTF3C3-201ENST00000263956 MTUS2Q5JR59 1369 aa12.27□□□□□ -0.45
GTF3C3-201ENST00000263956 JPH4Q96JJ6 628 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms