Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.49■□□□□ 0.23
PDGFAP04085 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.49■□□□□ 0.23
PDGFAP04085 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PDGFAP04085 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
PDGFAP04085 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PDGFAP04085 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.48■□□□□ 0.23
PDGFAP04085 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.48■□□□□ 0.23
PDGFAP04085 UNC93B6-202ENST00000528242 690 ntBASIC16.48■□□□□ 0.23
PDGFAP04085 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.48■□□□□ 0.23
PDGFAP04085 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 AL355385.1-201ENST00000606123 409 ntBASIC16.48■□□□□ 0.23
PDGFAP04085 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 AC046158.3-201ENST00000624947 2558 ntBASIC16.48■□□□□ 0.23
PDGFAP04085 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.48■□□□□ 0.23
PDGFAP04085 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.48■□□□□ 0.23
PDGFAP04085 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.48■□□□□ 0.23
PDGFAP04085 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.48■□□□□ 0.23
PDGFAP04085 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 HTR7P1-202ENST00000624664 4411 ntBASIC16.48■□□□□ 0.23
PDGFAP04085 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PDGFAP04085 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
PDGFAP04085 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
PDGFAP04085 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
PDGFAP04085 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
PDGFAP04085 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.47■□□□□ 0.23
PDGFAP04085 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 PMS2P2-201ENST00000425039 1128 ntBASIC16.47■□□□□ 0.23
PDGFAP04085 AC007967.2-201ENST00000432613 625 ntBASIC16.47■□□□□ 0.23
PDGFAP04085 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.47■□□□□ 0.23
PDGFAP04085 MTDHP4-201ENST00000600287 670 ntBASIC16.47■□□□□ 0.23
PDGFAP04085 AL139288.1-201ENST00000623748 933 ntBASIC16.47■□□□□ 0.23
PDGFAP04085 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.47■□□□□ 0.23
PDGFAP04085 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
PDGFAP04085 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.47■□□□□ 0.23
PDGFAP04085 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PDGFAP04085 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.46■□□□□ 0.23
PDGFAP04085 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.46■□□□□ 0.23
PDGFAP04085 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
PDGFAP04085 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
PDGFAP04085 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PDGFAP04085 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PDGFAP04085 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.46■□□□□ 0.23
PDGFAP04085 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.46■□□□□ 0.23
PDGFAP04085 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.46■□□□□ 0.23
PDGFAP04085 AC105339.3-201ENST00000560043 636 ntBASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms