RNA–Protein interactions for RNA: ENST00000348225.6

PTN-201, Transcript of pleiotrophin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTN, Length 1,614 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTN-201ENST00000348225 NISCHQ9Y2I1 1504 aa42.47■■■■■ 4.39
PTN-201ENST00000348225 CCDC180Q9P1Z9 1646 aa37.15■■■■□ 3.54
PTN-201ENST00000348225 ZCCHC6Q5VYS8 1495 aaKnown RBP35.67■■■■□ 3.3
PTN-201ENST00000348225 DCAF1Q9Y4B6 1507 aa35.17■■■■□ 3.22
PTN-201ENST00000348225 ABCC9O60706 1549 aa35.07■■■■□ 3.2
PTN-201ENST00000348225 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.19
PTN-201ENST00000348225 MYO15BQ96JP2 1530 aa34.79■■■■□ 3.16
PTN-201ENST00000348225 NACADO15069 1562 aa34.59■■■■□ 3.13
PTN-201ENST00000348225 SHROOM4Q9ULL8 1493 aa34.49■■■■□ 3.11
PTN-201ENST00000348225 RB1CC1Q8TDY2 1594 aa34.31■■■■□ 3.08
PTN-201ENST00000348225 SCRIBQ14160 1630 aa34.07■■■■□ 3.05
PTN-201ENST00000348225 UNC13AQ9UPW8 1703 aa33.58■■■□□ 2.97
PTN-201ENST00000348225 BICRAQ9NZM4 1560 aa33.21■■■□□ 2.91
PTN-201ENST00000348225 SUPT5HO00267 1087 aaKnown RBP33.17■■■□□ 2.9
PTN-201ENST00000348225 PABPN1Q86U42 306 aaKnown RBP eCLIP33.01■■■□□ 2.87
PTN-201ENST00000348225 CECR2Q9BXF3 1484 aa32.93■■■□□ 2.86
PTN-201ENST00000348225 RSF1Q96T23 1441 aaPredicted RBP32.88■■■□□ 2.85
PTN-201ENST00000348225 BAZ1AQ9NRL2 1556 aaPredicted RBP32.84■■■□□ 2.85
PTN-201ENST00000348225 MROH2BQ7Z745 1585 aa32.77■■■□□ 2.84
PTN-201ENST00000348225 SMARCA4P51532 1647 aa32.68■■■□□ 2.82
PTN-201ENST00000348225 WIZO95785 1651 aa32.51■■■□□ 2.8
PTN-201ENST00000348225 PEG3Q9GZU2 1588 aa32.3■■■□□ 2.76
PTN-201ENST00000348225 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
PTN-201ENST00000348225 TOP2AP11388 1531 aaKnown RBP32.23■■■□□ 2.75
PTN-201ENST00000348225 SMARCA2P51531 1590 aa32.17■■■□□ 2.74
PTN-201ENST00000348225 ATAD2BQ9ULI0 1458 aa32.13■■■□□ 2.73
PTN-201ENST00000348225 BAZ1BQ9UIG0 1483 aaKnown RBP31.98■■■□□ 2.71
PTN-201ENST00000348225 NCAPD3P42695 1498 aa31.88■■■□□ 2.69
PTN-201ENST00000348225 HMGXB3Q12766 1538 aa31.87■■■□□ 2.69
PTN-201ENST00000348225 CCDC88BA6NC98 1476 aa31.84■■■□□ 2.69
PTN-201ENST00000348225 CC2D2AQ9P2K1 1620 aa31.77■■■□□ 2.68
PTN-201ENST00000348225 CHIC1Q5VXU3 224 aa31.71■■■□□ 2.67
PTN-201ENST00000348225 TRIM41Q8WV44 630 aa31.24■■■□□ 2.59
PTN-201ENST00000348225 CFTRP13569 1480 aa31.15■■■□□ 2.58
PTN-201ENST00000348225 ABCC8Q09428 1581 aa31.14■■■□□ 2.57
PTN-201ENST00000348225 PRDM2Q13029 1718 aa31.08■■■□□ 2.57
PTN-201ENST00000348225 CADPSQ9ULU8 1353 aa31.04■■■□□ 2.56
PTN-201ENST00000348225 WRNQ14191 1432 aaPredicted RBP eCLIP30.99■■■□□ 2.55
PTN-201ENST00000348225 DNAJC5BQ9UF47 199 aa30.87■■■□□ 2.53
PTN-201ENST00000348225 LAMC3Q9Y6N6 1575 aa30.86■■■□□ 2.53
PTN-201ENST00000348225 SYNJ1O43426 1573 aa30.85■■■□□ 2.53
PTN-201ENST00000348225 TOP2BQ02880 1626 aa30.77■■■□□ 2.52
PTN-201ENST00000348225 BIVM-ERCC5R4GMW8 1640 aa30.76■■■□□ 2.51
PTN-201ENST00000348225 NESP48681 1621 aa30.74■■■□□ 2.51
PTN-201ENST00000348225 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
PTN-201ENST00000348225 CUX1P39880 1505 aa30.66■■■□□ 2.5
PTN-201ENST00000348225 PDS5BQ9NTI5 1447 aa30.6■■■□□ 2.49
PTN-201ENST00000348225 FAM9AQ8IZU1 332 aaPredicted RBP30.6■■■□□ 2.49
PTN-201ENST00000348225 EEA1Q15075 1411 aa30.57■■■□□ 2.48
PTN-201ENST00000348225 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
PTN-201ENST00000348225 SOGA1O94964 1423 aa30.52■■■□□ 2.48
PTN-201ENST00000348225 DNMBPQ6XZF7 1577 aa30.46■■■□□ 2.47
PTN-201ENST00000348225 LOC105371045A0A1W2PR82 267 aa30.44■■■□□ 2.46
PTN-201ENST00000348225 KIF21AQ7Z4S6 1674 aa30.44■■■□□ 2.46
PTN-201ENST00000348225 RUSC2Q8N2Y8 1516 aa30.39■■■□□ 2.45
PTN-201ENST00000348225 TOPBP1Q92547 1522 aa30.37■■■□□ 2.45
PTN-201ENST00000348225 FGD5Q6ZNL6 1462 aa30.35■■■□□ 2.45
PTN-201ENST00000348225 CSRNP3Q8WYN3 585 aa30.32■■■□□ 2.44
PTN-201ENST00000348225 URB2Q14146 1524 aaKnown RBP30.31■■■□□ 2.44
PTN-201ENST00000348225 KIF27Q86VH2 1401 aa30.24■■■□□ 2.43
PTN-201ENST00000348225 POLA1P09884 1462 aaPredicted RBP30.22■■■□□ 2.43
PTN-201ENST00000348225 MRC2Q9UBG0 1479 aa30.21■■■□□ 2.43
PTN-201ENST00000348225 KIF21BO75037 1637 aa30.16■■■□□ 2.42
PTN-201ENST00000348225 CUX2O14529 1486 aa30.14■■■□□ 2.42
PTN-201ENST00000348225 ERCC6Q03468 1493 aa30.13■■■□□ 2.41
PTN-201ENST00000348225 EHMT2Q96KQ7 1210 aa30.13■■■□□ 2.41
PTN-201ENST00000348225 GOLGA3Q08378 1498 aa30.12■■■□□ 2.41
PTN-201ENST00000348225 ABCA10Q8WWZ4 1543 aa30.1■■■□□ 2.41
PTN-201ENST00000348225 RAD54L2Q9Y4B4 1467 aa30.07■■■□□ 2.4
PTN-201ENST00000348225 WDR62O43379 1518 aa30.06■■■□□ 2.4
PTN-201ENST00000348225 WDR97A6NE52 1622 aa30.03■■■□□ 2.4
PTN-201ENST00000348225 ERICH3Q5RHP9 1530 aa29.98■■■□□ 2.39
PTN-201ENST00000348225 PRXQ9BXM0 1461 aa29.98■■■□□ 2.39
PTN-201ENST00000348225 TNIKQ9UKE5 1360 aa29.98■■■□□ 2.39
PTN-201ENST00000348225 THOC2Q8NI27 1593 aaKnown RBP29.97■■■□□ 2.39
PTN-201ENST00000348225 TARBP1Q13395 1621 aaKnown RBP29.93■■■□□ 2.38
PTN-201ENST00000348225 UBTFP17480 764 aaKnown RBP29.93■■■□□ 2.38
PTN-201ENST00000348225 RAPGEF2Q9Y4G8 1499 aa29.92■■■□□ 2.38
PTN-201ENST00000348225 IGF1RP08069 1367 aa29.9■■■□□ 2.38
PTN-201ENST00000348225 ABCA5Q8WWZ7 1642 aa29.88■■■□□ 2.37
PTN-201ENST00000348225 IFT140Q96RY7 1462 aa29.84■■■□□ 2.37
PTN-201ENST00000348225 CEP162Q5TB80 1403 aa29.8■■■□□ 2.36
PTN-201ENST00000348225 CUL7Q14999 1698 aa29.8■■■□□ 2.36
PTN-201ENST00000348225 GAPVD1Q14C86 1478 aa29.79■■■□□ 2.36
PTN-201ENST00000348225 CARMIL1Q5VZK9 1371 aa29.78■■■□□ 2.36
PTN-201ENST00000348225 TDRD9Q8NDG6 1382 aaKnown RBP29.78■■■□□ 2.36
PTN-201ENST00000348225 PBRM1Q86U86 1689 aa29.68■■■□□ 2.34
PTN-201ENST00000348225 AQRO60306 1485 aaKnown RBP eCLIP29.61■■■□□ 2.33
PTN-201ENST00000348225 CLIP1P30622 1438 aa29.6■■■□□ 2.33
PTN-201ENST00000348225 ZNF608Q9ULD9 1512 aaPredicted RBP29.59■■■□□ 2.33
PTN-201ENST00000348225 GRIN2BQ13224 1484 aa29.59■■■□□ 2.33
PTN-201ENST00000348225 EIF4G3O43432 1585 aaKnown RBP29.57■■■□□ 2.32
PTN-201ENST00000348225 ADAMTS12P58397 1594 aa29.5■■■□□ 2.31
PTN-201ENST00000348225 FHAD1B1AJZ9 1412 aa29.49■■■□□ 2.31
PTN-201ENST00000348225 CTTNBP2Q8WZ74 1663 aa29.45■■■□□ 2.31
PTN-201ENST00000348225 RANGAP1P46060 587 aaPredicted RBP29.4■■■□□ 2.3
PTN-201ENST00000348225 SNAPC4Q5SXM2 1469 aa29.39■■■□□ 2.3
PTN-201ENST00000348225 MAGI1Q96QZ7 1491 aaPredicted RBP29.37■■■□□ 2.29
PTN-201ENST00000348225 VPS8Q8N3P4 1428 aa29.34■■■□□ 2.29
PTN-201ENST00000348225 ARAP1Q96P48 1450 aa29.31■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms