RNA–Protein interactions for RNA: ENST00000398493.5

MBD1-208, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 5 BASIC

Gene MBD1, Length 1,845 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-208ENST00000398493 NISCHQ9Y2I1 1504 aa42.38■■■■■ 4.38
MBD1-208ENST00000398493 CCDC180Q9P1Z9 1646 aa37.3■■■■□ 3.56
MBD1-208ENST00000398493 ABCC9O60706 1549 aa36.22■■■■□ 3.39
MBD1-208ENST00000398493 ZCCHC6Q5VYS8 1495 aaKnown RBP35.4■■■■□ 3.26
MBD1-208ENST00000398493 DCAF8L2P0C7V8 631 aa35.34■■■■□ 3.25
MBD1-208ENST00000398493 NACADO15069 1562 aa35.01■■■■□ 3.19
MBD1-208ENST00000398493 DCAF1Q9Y4B6 1507 aa35.01■■■■□ 3.19
MBD1-208ENST00000398493 MYO15BQ96JP2 1530 aa34.95■■■■□ 3.18
MBD1-208ENST00000398493 RB1CC1Q8TDY2 1594 aa34.92■■■■□ 3.18
MBD1-208ENST00000398493 SCRIBQ14160 1630 aa34.23■■■■□ 3.07
MBD1-208ENST00000398493 UNC13AQ9UPW8 1703 aa34.16■■■■□ 3.06
MBD1-208ENST00000398493 PABPN1Q86U42 306 aaKnown RBP eCLIP34.03■■■■□ 3.04
MBD1-208ENST00000398493 BICRAQ9NZM4 1560 aa33.94■■■■□ 3.02
MBD1-208ENST00000398493 SHROOM4Q9ULL8 1493 aa33.94■■■■□ 3.02
MBD1-208ENST00000398493 CECR2Q9BXF3 1484 aa33.06■■■□□ 2.88
MBD1-208ENST00000398493 EIF4G1Q04637 1599 aaKnown RBP32.98■■■□□ 2.87
MBD1-208ENST00000398493 DNAJC5BQ9UF47 199 aa32.92■■■□□ 2.86
MBD1-208ENST00000398493 BAZ1AQ9NRL2 1556 aaPredicted RBP32.76■■■□□ 2.83
MBD1-208ENST00000398493 SMARCA4P51532 1647 aa32.74■■■□□ 2.83
MBD1-208ENST00000398493 MROH2BQ7Z745 1585 aa32.73■■■□□ 2.83
MBD1-208ENST00000398493 CC2D2AQ9P2K1 1620 aa32.72■■■□□ 2.83
MBD1-208ENST00000398493 RSF1Q96T23 1441 aaPredicted RBP32.54■■■□□ 2.8
MBD1-208ENST00000398493 ATAD2BQ9ULI0 1458 aa32.49■■■□□ 2.79
MBD1-208ENST00000398493 PEG3Q9GZU2 1588 aa32.39■■■□□ 2.78
MBD1-208ENST00000398493 SMARCA2P51531 1590 aa32.38■■■□□ 2.77
MBD1-208ENST00000398493 WIZO95785 1651 aa32.37■■■□□ 2.77
MBD1-208ENST00000398493 NCAPD3P42695 1498 aa32.37■■■□□ 2.77
MBD1-208ENST00000398493 BAZ1BQ9UIG0 1483 aaKnown RBP32.21■■■□□ 2.75
MBD1-208ENST00000398493 HMGXB3Q12766 1538 aa32.19■■■□□ 2.74
MBD1-208ENST00000398493 SUPT5HO00267 1087 aaKnown RBP32.19■■■□□ 2.74
MBD1-208ENST00000398493 TOP2AP11388 1531 aaKnown RBP32■■■□□ 2.71
MBD1-208ENST00000398493 CCDC88BA6NC98 1476 aa31.7■■■□□ 2.67
MBD1-208ENST00000398493 NESP48681 1621 aa31.52■■■□□ 2.64
MBD1-208ENST00000398493 CADPSQ9ULU8 1353 aa31.48■■■□□ 2.63
MBD1-208ENST00000398493 CFTRP13569 1480 aa31.38■■■□□ 2.61
MBD1-208ENST00000398493 LAMC3Q9Y6N6 1575 aa31.36■■■□□ 2.61
MBD1-208ENST00000398493 PDS5BQ9NTI5 1447 aa31.17■■■□□ 2.58
MBD1-208ENST00000398493 ERCC6Q03468 1493 aa31.11■■■□□ 2.57
MBD1-208ENST00000398493 FANCD2Q9BXW9 1451 aa31.11■■■□□ 2.57
MBD1-208ENST00000398493 KIF21AQ7Z4S6 1674 aa31.05■■■□□ 2.56
MBD1-208ENST00000398493 PRDM2Q13029 1718 aa31.02■■■□□ 2.56
MBD1-208ENST00000398493 CEP164Q9UPV0 1460 aa30.97■■■□□ 2.55
MBD1-208ENST00000398493 CHIC1Q5VXU3 224 aa30.87■■■□□ 2.53
MBD1-208ENST00000398493 MRC2Q9UBG0 1479 aa30.83■■■□□ 2.53
MBD1-208ENST00000398493 THOC2Q8NI27 1593 aaKnown RBP30.82■■■□□ 2.52
MBD1-208ENST00000398493 URB2Q14146 1524 aaKnown RBP30.79■■■□□ 2.52
MBD1-208ENST00000398493 ABCC8Q09428 1581 aa30.72■■■□□ 2.51
MBD1-208ENST00000398493 WDR62O43379 1518 aa30.71■■■□□ 2.51
MBD1-208ENST00000398493 TOPBP1Q92547 1522 aa30.67■■■□□ 2.5
MBD1-208ENST00000398493 CUX1P39880 1505 aa30.64■■■□□ 2.5
MBD1-208ENST00000398493 WRNQ14191 1432 aaPredicted RBP eCLIP30.63■■■□□ 2.49
MBD1-208ENST00000398493 DNMBPQ6XZF7 1577 aa30.62■■■□□ 2.49
MBD1-208ENST00000398493 SYNJ1O43426 1573 aa30.54■■■□□ 2.48
MBD1-208ENST00000398493 CUX2O14529 1486 aa30.54■■■□□ 2.48
MBD1-208ENST00000398493 TOP2BQ02880 1626 aa30.46■■■□□ 2.47
MBD1-208ENST00000398493 POLA1P09884 1462 aaPredicted RBP30.45■■■□□ 2.47
MBD1-208ENST00000398493 FGD5Q6ZNL6 1462 aa30.45■■■□□ 2.46
MBD1-208ENST00000398493 BIVM-ERCC5R4GMW8 1640 aa30.42■■■□□ 2.46
MBD1-208ENST00000398493 RAD54L2Q9Y4B4 1467 aa30.38■■■□□ 2.45
MBD1-208ENST00000398493 SOGA1O94964 1423 aa30.34■■■□□ 2.45
MBD1-208ENST00000398493 IFT140Q96RY7 1462 aa30.31■■■□□ 2.44
MBD1-208ENST00000398493 TRIM41Q8WV44 630 aa30.31■■■□□ 2.44
MBD1-208ENST00000398493 TARBP1Q13395 1621 aaKnown RBP30.27■■■□□ 2.44
MBD1-208ENST00000398493 ZNF608Q9ULD9 1512 aaPredicted RBP30.23■■■□□ 2.43
MBD1-208ENST00000398493 TDRD9Q8NDG6 1382 aaKnown RBP30.17■■■□□ 2.42
MBD1-208ENST00000398493 ABCA10Q8WWZ4 1543 aa30.15■■■□□ 2.42
MBD1-208ENST00000398493 AQRO60306 1485 aaKnown RBP eCLIP30.14■■■□□ 2.426e-7■■■□□ 18.9
MBD1-208ENST00000398493 WDR97A6NE52 1622 aa30.09■■■□□ 2.41
MBD1-208ENST00000398493 EIF4G3O43432 1585 aaKnown RBP30.04■■■□□ 2.4
MBD1-208ENST00000398493 GAPVD1Q14C86 1478 aa29.98■■■□□ 2.39
MBD1-208ENST00000398493 ABCA5Q8WWZ7 1642 aa29.96■■■□□ 2.39
MBD1-208ENST00000398493 RUSC2Q8N2Y8 1516 aa29.95■■■□□ 2.38
MBD1-208ENST00000398493 KIF27Q86VH2 1401 aa29.92■■■□□ 2.38
MBD1-208ENST00000398493 GRIN2BQ13224 1484 aa29.88■■■□□ 2.37
MBD1-208ENST00000398493 IGF1RP08069 1367 aa29.82■■■□□ 2.36
MBD1-208ENST00000398493 SNAPC4Q5SXM2 1469 aa29.81■■■□□ 2.36
MBD1-208ENST00000398493 PBRM1Q86U86 1689 aa29.8■■■□□ 2.36
MBD1-208ENST00000398493 FAM9AQ8IZU1 332 aaPredicted RBP29.76■■■□□ 2.35
MBD1-208ENST00000398493 ERICH3Q5RHP9 1530 aa29.76■■■□□ 2.35
MBD1-208ENST00000398493 MAGI1Q96QZ7 1491 aaPredicted RBP29.72■■■□□ 2.35
MBD1-208ENST00000398493 LOC105371045A0A1W2PR82 267 aa29.71■■■□□ 2.35
MBD1-208ENST00000398493 FBLN2P98095 1184 aa29.68■■■□□ 2.34
MBD1-208ENST00000398493 CSRNP3Q8WYN3 585 aa29.65■■■□□ 2.34
MBD1-208ENST00000398493 ADAMTS12P58397 1594 aa29.64■■■□□ 2.34
MBD1-208ENST00000398493 CHMP7Q8WUX9 453 aaPredicted RBP29.64■■■□□ 2.33
MBD1-208ENST00000398493 FHAD1B1AJZ9 1412 aa29.64■■■□□ 2.33
MBD1-208ENST00000398493 EEA1Q15075 1411 aa29.63■■■□□ 2.33
MBD1-208ENST00000398493 SYNJ2O15056 1496 aa29.63■■■□□ 2.33
MBD1-208ENST00000398493 CARMIL1Q5VZK9 1371 aa29.62■■■□□ 2.33
MBD1-208ENST00000398493 DNAJC5Q9H3Z4 198 aa29.61■■■□□ 2.33
MBD1-208ENST00000398493 CUL7Q14999 1698 aa29.54■■■□□ 2.32
MBD1-208ENST00000398493 CHD1O14646 1710 aa29.54■■■□□ 2.32
MBD1-208ENST00000398493 GRIN2AQ12879 1464 aa29.51■■■□□ 2.32
MBD1-208ENST00000398493 PRXQ9BXM0 1461 aa29.51■■■□□ 2.32
MBD1-208ENST00000398493 OSCARQ8IYS5 282 aa29.47■■■□□ 2.31
MBD1-208ENST00000398493 RAPGEF2Q9Y4G8 1499 aa29.46■■■□□ 2.31
MBD1-208ENST00000398493 EHMT2Q96KQ7 1210 aa29.39■■■□□ 2.3
MBD1-208ENST00000398493 NUP160Q12769 1436 aa29.37■■■□□ 2.29
MBD1-208ENST00000398493 CEP170Q5SW79 1584 aa29.36■■■□□ 2.29
MBD1-208ENST00000398493 KIF21BO75037 1637 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms