Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ZNF321P-201ENST00000313956 2341 ntTSL 2 BASIC11.02□□□□□ -0.644e-8■■■■■ 120.3
SF3B1O75533 CD59-208ENST00000527577 686 ntAPPRIS P2 TSL 3 BASIC10.93□□□□□ -0.661e-7■■■■■ 120.3
SF3B1O75533 TLE3-204ENST00000537387 457 ntTSL 510.92□□□□□ -0.664e-8■■■■■ 120.3
SF3B1O75533 TMEM241-204ENST00000475185 2350 ntTSL 1 (best)10.82□□□□□ -0.684e-8■■■■■ 120.3
SF3B1O75533 CD59-213ENST00000533403 1847 ntTSL 3 BASIC10.58□□□□□ -0.721e-7■■■■■ 120.3
SF3B1O75533 SIPA1L1-213ENST00000556408 903 ntTSL 310.57□□□□□ -0.724e-6■■■■■ 120.3
SF3B1O75533 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.764e-6■■■■■ 120.3
SF3B1O75533 FYN-229ENST00000538466 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.774e-6■■■■■ 120.3
SF3B1O75533 GPHN-201ENST00000315266 4193 ntAPPRIS ALT1 TSL 1 (best) BASIC10.09□□□□□ -0.794e-6■■■■■ 120.3
SF3B1O75533 DST-209ENST00000449297 2108 ntTSL 510.03□□□□□ -0.84e-6■■■■■ 120.3
SF3B1O75533 CD59-202ENST00000395850 1889 ntAPPRIS P2 TSL 1 (best) BASIC9.96□□□□□ -0.821e-7■■■■■ 120.3
SF3B1O75533 PITPNM2-207ENST00000542210 564 ntTSL 49.94□□□□□ -0.824e-6■■■■■ 120.3
SF3B1O75533 NOD1-208ENST00000489614 3098 ntTSL 29.91□□□□□ -0.824e-6■■■■■ 120.3
SF3B1O75533 DAB2-217ENST00000545653 4537 ntTSL 5 BASIC9.91□□□□□ -0.824e-6■■■■■ 120.3
SF3B1O75533 DAB2-201ENST00000320816 4534 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.844e-6■■■■■ 120.3
SF3B1O75533 AC010487.3-201ENST00000634278 1966 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.864e-8■■■■■ 120.3
SF3B1O75533 UBLCP1-201ENST00000296786 2392 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.884e-8■■■■■ 120.3
SF3B1O75533 C1orf61-206ENST00000462458 1987 ntTSL 1 (best)9.56□□□□□ -0.885e-12■■■■■ 120.3
SF3B1O75533 C1orf61-209ENST00000464238 412 ntTSL 29.56□□□□□ -0.885e-12■■■■■ 120.3
SF3B1O75533 PPM1A-201ENST00000325642 1713 ntTSL 2 BASIC9.39□□□□□ -0.914e-8■■■■■ 120.3
SF3B1O75533 C1orf61-211ENST00000465570 528 ntTSL 29.29□□□□□ -0.925e-12■■■■■ 120.3
SF3B1O75533 FYN-217ENST00000496864 839 ntTSL 48.92□□□□□ -0.984e-6■■■■■ 120.3
SF3B1O75533 ZNF816-ZNF321P-201ENST00000391777 1252 ntAPPRIS P1 TSL 2 BASIC8.6□□□□□ -1.034e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-212ENST00000507109 468 ntTSL 58.51□□□□□ -1.054e-8■■■■■ 120.3
SF3B1O75533 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC8.47□□□□□ -1.054e-6■■■■■ 120.3
SF3B1O75533 SLC38A9-207ENST00000503891 541 ntTSL 48.25□□□□□ -1.094e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-209ENST00000505563 950 ntTSL 58.09□□□□□ -1.114e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-205ENST00000502416 562 ntTSL 47.87□□□□□ -1.154e-8■■■■■ 120.3
SF3B1O75533 PPM1A-206ENST00000531143 1546 ntTSL 1 (best)7.85□□□□□ -1.154e-8■■■■■ 120.3
SF3B1O75533 C2orf88-202ENST00000396974 998 ntAPPRIS P1 TSL 2 BASIC7.66□□□□□ -1.184e-6■■■■■ 120.3
SF3B1O75533 GPHN-206ENST00000553936 574 ntTSL 37.36□□□□□ -1.234e-6■■■■■ 120.3
SF3B1O75533 C1orf61-226ENST00000608007 3138 ntTSL 1 (best)7.34□□□□□ -1.235e-12■■■■■ 120.3
SF3B1O75533 C2orf88-203ENST00000409545 570 ntTSL 37.02□□□□□ -1.284e-6■■■■■ 120.3
SF3B1O75533 C9-203ENST00000483232 560 ntTSL 47.01□□□□□ -1.294e-6■■■■■ 120.3
SF3B1O75533 ATPAF1-209ENST00000529214 1471 ntTSL 26.74□□□□□ -1.334e-6■■■■■ 120.3
SF3B1O75533 ATPAF1-208ENST00000526821 1222 ntTSL 36.39□□□□□ -1.394e-6■■■■■ 120.3
SF3B1O75533 SBF2-202ENST00000420722 1188 ntTSL 56.29□□□□□ -1.44e-8■■■■■ 120.3
SF3B1O75533 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.97□□□□□ -1.454e-6■■■■■ 120.3
SF3B1O75533 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.83□□□□□ -1.484e-6■■■■■ 120.3
SF3B1O75533 RGS12-219ENST00000511805 552 ntTSL 1 (best)5.79□□□□□ -1.489e-10■■■■■ 120.3
SF3B1O75533 BPTF-205ENST00000424123 8295 ntAPPRIS ALT2 TSL 1 (best)5.71□□□□□ -1.54e-6■■■■■ 120.3
SF3B1O75533 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.59□□□□□ -1.524e-6■■■■■ 120.3
SF3B1O75533 SLC38A9-215ENST00000508124 2370 ntTSL 25.57□□□□□ -1.524e-8■■■■■ 120.3
SF3B1O75533 PPM1A-208ENST00000532036 1561 ntTSL 55.39□□□□□ -1.554e-8■■■■■ 120.3
SF3B1O75533 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.34□□□□□ -1.554e-6■■■■■ 120.3
SF3B1O75533 SLC38A9-220ENST00000513993 571 ntTSL 44.68□□□□□ -1.664e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-211ENST00000506624 370 ntTSL 54.12□□□□□ -1.754e-8■■■■■ 120.3
SF3B1O75533 GPHN-210ENST00000555668 550 ntTSL 44.05□□□□□ -1.764e-6■■■■■ 120.3
SF3B1O75533 GPHN-215ENST00000557654 503 ntTSL 43.77□□□□□ -1.814e-6■■■■■ 120.3
SF3B1O75533 SLC38A9-221ENST00000514806 760 ntTSL 23.62□□□□□ -1.834e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-219ENST00000513275 508 ntTSL 43.41□□□□□ -1.864e-8■■■■■ 120.3
SF3B1O75533 SLC38A9-217ENST00000512208 731 ntTSL 43.37□□□□□ -1.874e-8■■■■■ 120.3
SF3B1O75533 SIPA1L1-206ENST00000554362 552 ntTSL 53.24□□□□□ -1.894e-6■■■■■ 120.3
SF3B1O75533 GPHN-214ENST00000556633 512 ntTSL 32.83□□□□□ -1.964e-6■■■■■ 120.3
SF3B1O75533 C2orf88-208ENST00000490033 482 ntTSL 32.82□□□□□ -1.964e-6■■■■■ 120.3
SF3B1O75533 ATPAF1-211ENST00000534216 693 ntTSL 52.62□□□□□ -1.994e-6■■■■■ 120.3
SF3B1O75533 C2orf88-206ENST00000450357 486 ntTSL 32.58□□□□□ -24e-6■■■■■ 120.3
SF3B1O75533 CD58-205ENST00000526981 395 ntAPPRIS ALT2 TSL 1 (best)2.22□□□□□ -2.054e-6■■■■■ 120.3
SF3B1O75533 SIPA1L1-205ENST00000554126 576 ntTSL 50.68□□□□□ -2.34e-6■■■■■ 120.3
SF3B1O75533 ATXN7-204ENST00000474112 3367 ntTSL 218.07■□□□□ 0.486e-6■■■■■ 120.2
SF3B1O75533 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.016e-6■■■■■ 120.2
SF3B1O75533 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.53■□□□□ 0.563e-6■■■■■ 120.2
SF3B1O75533 PWP1-201ENST00000412830 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.463e-6■■■■■ 120.2
SF3B1O75533 SCAI-205ENST00000477186 1808 ntTSL 219.61■□□□□ 0.733e-6■■■■■ 120.2
SF3B1O75533 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.01■□□□□ 0.473e-6■■■■■ 120.2
SF3B1O75533 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.73e-6■■■■■ 120.2
SF3B1O75533 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.22■□□□□ 0.671e-7■■■■■ 120.1
SF3B1O75533 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.061e-7■■■■■ 120.1
SF3B1O75533 MED16-210ENST00000606248 3181 ntTSL 1 (best)14.24□□□□□ -0.131e-7■■■■■ 120.1
SF3B1O75533 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.171e-7■■■■■ 120.1
SF3B1O75533 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.311e-7■■■■■ 120.1
SF3B1O75533 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC28.53■■■□□ 2.163e-6■■■■■ 120.1
SF3B1O75533 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.113e-6■■■■■ 120.1
SF3B1O75533 FTCD-212ENST00000498355 1936 ntTSL 227.84■■■□□ 2.053e-6■■■■■ 120.1
SF3B1O75533 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.69■■■□□ 2.023e-6■■■■■ 120.1
SF3B1O75533 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.823e-6■■■■■ 120.1
SF3B1O75533 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.193e-6■■■■■ 120.1
SF3B1O75533 GABBR1-208ENST00000472823 4286 ntTSL 518.78■□□□□ 0.63e-7■■■■■ 120
SF3B1O75533 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.35■□□□□ 0.533e-7■■■■■ 120
SF3B1O75533 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.293e-7■■■■■ 120
SF3B1O75533 USP20-205ENST00000474895 825 ntTSL 514.2□□□□□ -0.143e-6■■■■■ 119.9
SF3B1O75533 ZFP91-CNTF-202ENST00000422974 1788 ntAPPRIS ALT2 TSL 511.94□□□□□ -0.58e-7■■■■■ 119.9
SF3B1O75533 ASPSCR1-217ENST00000583693 3976 ntTSL 213.09□□□□□ -0.312e-6■■■■■ 119.9
SF3B1O75533 ASPSCR1-215ENST00000583142 532 ntTSL 311.92□□□□□ -0.52e-6■■■■■ 119.9
SF3B1O75533 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.535e-6■■■■■ 119.9
SF3B1O75533 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.175e-6■■■■■ 119.9
SF3B1O75533 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.741e-6■■■■■ 119.9
SF3B1O75533 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.064e-6■■■■■ 119.8
SF3B1O75533 BABAM2-202ENST00000344773 1852 ntTSL 2 BASIC11.35□□□□□ -0.594e-6■■■■■ 119.8
SF3B1O75533 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.264e-6■■■■■ 119.8
SF3B1O75533 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC7.19□□□□□ -1.264e-6■■■■■ 119.8
SF3B1O75533 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC6.7□□□□□ -1.344e-6■■■■■ 119.8
SF3B1O75533 FGGY-205ENST00000413489 681 ntTSL 319.25■□□□□ 0.672e-7■■■■■ 119.8
SF3B1O75533 FGGY-212ENST00000474476 905 ntTSL 514.69□□□□□ -0.062e-7■■■■■ 119.8
SF3B1O75533 FGGY-218ENST00000495718 1947 ntTSL 214.3□□□□□ -0.122e-7■■■■■ 119.8
SF3B1O75533 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.083e-6■■■■■ 119.8
SF3B1O75533 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.15e-7■■■■■ 119.8
SF3B1O75533 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC14.18□□□□□ -0.145e-7■■■■■ 119.8
SF3B1O75533 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC8.63□□□□□ -1.035e-7■■■■■ 119.8
SF3B1O75533 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.66□□□□□ -1.985e-7■■■■■ 119.8
Retrieved 100 of 46,956 protein–RNA pairs in 1349.7 ms