RNA–Protein interactions for RNA: ENST00000557654.5

GPHN-215, Transcript of gephyrin, humanhuman

TSL 4

Gene GPHN, Length 503 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-215ENST00000557654 AEBP2Q6ZN18 517 aaPredicted RBP29.1■■■□□ 2.25
GPHN-215ENST00000557654 CHIC1Q5VXU3 224 aa28.22■■■□□ 2.11
GPHN-215ENST00000557654 PHF23Q9BUL5 403 aaPredicted RBP24.88■■□□□ 1.57
GPHN-215ENST00000557654 SENP3Q9H4L4 574 aaPredicted RBP24.58■■□□□ 1.53
GPHN-215ENST00000557654 FOXD1Q16676 465 aa22.92■■□□□ 1.26
GPHN-215ENST00000557654 PLPPR3Q6T4P5 718 aa22.83■■□□□ 1.25
GPHN-215ENST00000557654 PPP6R1Q9UPN7 881 aa22.01■■□□□ 1.11
GPHN-215ENST00000557654 ADRA2BP18089 450 aa21.99■■□□□ 1.11
GPHN-215ENST00000557654 PIAS4Q8N2W9 510 aaPredicted RBP21.57■■□□□ 1.04
GPHN-215ENST00000557654 MSH5O43196 834 aa21.07■□□□□ 0.96
GPHN-215ENST00000557654 PPP4R3CPQ6ZMV5 832 aa20.16■□□□□ 0.82
GPHN-215ENST00000557654 MAPK8IP2Q13387 824 aaPredicted RBP20.01■□□□□ 0.79
GPHN-215ENST00000557654 SCAF1Q9H7N4 1312 aaKnown RBP19.95■□□□□ 0.78
GPHN-215ENST00000557654 DMRT2Q9Y5R5 561 aa19.63■□□□□ 0.73
GPHN-215ENST00000557654 KCNA4P22459 653 aa19.61■□□□□ 0.73
GPHN-215ENST00000557654 CNKSR2Q8WXI2 1034 aa19.56■□□□□ 0.72
GPHN-215ENST00000557654 NCBP3Q53F19 620 aaKnown RBP19.5■□□□□ 0.71
GPHN-215ENST00000557654 POTEDQ86YR6 584 aa19.49■□□□□ 0.71
GPHN-215ENST00000557654 NPM3O75607 178 aaKnown RBP19.32■□□□□ 0.68
GPHN-215ENST00000557654 RNF216Q9NWF9 866 aaPredicted RBP19.2■□□□□ 0.66
GPHN-215ENST00000557654 HOXD11P31277 338 aaPredicted RBP19.16■□□□□ 0.66
GPHN-215ENST00000557654 DCAF8L1A6NGE4 600 aa18.86■□□□□ 0.61
GPHN-215ENST00000557654 DNAJC5BQ9UF47 199 aa18.63■□□□□ 0.57
GPHN-215ENST00000557654 SLC4A1APQ9BWU0 796 aaKnown RBP18.6■□□□□ 0.57
GPHN-215ENST00000557654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.3■□□□□ 0.52
GPHN-215ENST00000557654 SLC4A2P04920 1241 aa18.29■□□□□ 0.52
GPHN-215ENST00000557654 RNF39Q9H2S5 420 aa18.1■□□□□ 0.49
GPHN-215ENST00000557654 ZBTB22O15209 634 aa18.08■□□□□ 0.48
GPHN-215ENST00000557654 EHMT2Q96KQ7 1210 aa18.03■□□□□ 0.48
GPHN-215ENST00000557654 U3KPZ7 1027 aaPredicted RBP18.02■□□□□ 0.48
GPHN-215ENST00000557654 FOXD4L1Q9NU39 408 aa18.01■□□□□ 0.47
GPHN-215ENST00000557654 CSRNP3Q8WYN3 585 aa17.83■□□□□ 0.44
GPHN-215ENST00000557654 C1QBPQ07021 282 aaKnown RBP17.82■□□□□ 0.44
GPHN-215ENST00000557654 MYCNP04198 464 aaPredicted RBP17.8■□□□□ 0.44
GPHN-215ENST00000557654 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
GPHN-215ENST00000557654 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.61■□□□□ 0.41
GPHN-215ENST00000557654 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
GPHN-215ENST00000557654 SPINK5Q9NQ38 1064 aaPredicted RBP17.59■□□□□ 0.41
GPHN-215ENST00000557654 SAMD1Q6SPF0 538 aaPredicted RBP17.58■□□□□ 0.4
GPHN-215ENST00000557654 CAPN15O75808 1086 aa17.48■□□□□ 0.39
GPHN-215ENST00000557654 ATF5Q9Y2D1 282 aaPredicted RBP17.46■□□□□ 0.39
GPHN-215ENST00000557654 APLP2Q06481 763 aa17.43■□□□□ 0.38
GPHN-215ENST00000557654 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.37
GPHN-215ENST00000557654 ATXN8OSP0DMR3 200 aa17.31■□□□□ 0.36
GPHN-215ENST00000557654 ZNF219Q9P2Y4 722 aaPredicted RBP17.28■□□□□ 0.36
GPHN-215ENST00000557654 DSG3P32926 999 aa17.21■□□□□ 0.35
GPHN-215ENST00000557654 ABCB7O75027 752 aa17.19■□□□□ 0.34
GPHN-215ENST00000557654 POLA2Q14181 598 aa17.06■□□□□ 0.32
GPHN-215ENST00000557654 MKRN4PQ13434 485 aaPredicted RBP16.66■□□□□ 0.26
GPHN-215ENST00000557654 ZBTB12Q9Y330 459 aaPredicted RBP16.65■□□□□ 0.26
GPHN-215ENST00000557654 FBLN2P98095 1184 aa16.59■□□□□ 0.25
GPHN-215ENST00000557654 OSCARQ8IYS5 282 aa16.52■□□□□ 0.24
GPHN-215ENST00000557654 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
GPHN-215ENST00000557654 SPDYE2BA6NHP3 402 aa16.24■□□□□ 0.19
GPHN-215ENST00000557654 SPDYE6P0CI01 402 aa16.24■□□□□ 0.19
GPHN-215ENST00000557654 SPDYE2Q495Y8 402 aa16.24■□□□□ 0.19
GPHN-215ENST00000557654 ZNF692Q9BU19 519 aaPredicted RBP16.2■□□□□ 0.18
GPHN-215ENST00000557654 SPDYE4A6NLX3 237 aa16.18■□□□□ 0.18
GPHN-215ENST00000557654 FKBP8Q14318 412 aa16.13■□□□□ 0.17
GPHN-215ENST00000557654 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
GPHN-215ENST00000557654 AKT1S1Q96B36 256 aa16.11■□□□□ 0.17
GPHN-215ENST00000557654 PABPN1Q86U42 306 aaKnown RBP eCLIP16.02■□□□□ 0.16
GPHN-215ENST00000557654 REM2Q8IYK8 340 aaPredicted RBP16.01■□□□□ 0.15
GPHN-215ENST00000557654 PROM2Q8N271 834 aa15.86■□□□□ 0.13
GPHN-215ENST00000557654 PITPNM1O00562 1244 aa15.85■□□□□ 0.13
GPHN-215ENST00000557654 CLEC11AQ9Y240 323 aa15.81■□□□□ 0.12
GPHN-215ENST00000557654 SPDYE1Q8NFV5 336 aaPredicted RBP15.79■□□□□ 0.12
GPHN-215ENST00000557654 CHRDL2Q6WN34 429 aa15.75■□□□□ 0.11
GPHN-215ENST00000557654 STAG3Q9UJ98 1225 aa15.62■□□□□ 0.09
GPHN-215ENST00000557654 PRR29P0C7W0 189 aa15.6■□□□□ 0.09
GPHN-215ENST00000557654 PIP4P2Q8N4L2 257 aa15.55■□□□□ 0.08
GPHN-215ENST00000557654 FXR2P51116 673 aaKnown RBP eCLIP15.53■□□□□ 0.08
GPHN-215ENST00000557654 CHADLQ6NUI6 762 aa15.48■□□□□ 0.07
GPHN-215ENST00000557654 FBXO3Q9UK99 471 aa15.46■□□□□ 0.07
GPHN-215ENST00000557654 PRKAR2AP13861 404 aaKnown RBP15.44■□□□□ 0.06
GPHN-215ENST00000557654 CREBZFQ9NS37 354 aa15.42■□□□□ 0.06
GPHN-215ENST00000557654 POTEHQ6S545 545 aa15.39■□□□□ 0.05
GPHN-215ENST00000557654 MIER1Q8N108 512 aa15.35■□□□□ 0.05
GPHN-215ENST00000557654 VASPP50552 380 aaPredicted RBP15.34■□□□□ 0.05
GPHN-215ENST00000557654 PLCD3Q8N3E9 789 aa15.32■□□□□ 0.04
GPHN-215ENST00000557654 FARP1Q9Y4F1 1045 aaPredicted RBP15.25■□□□□ 0.03
GPHN-215ENST00000557654 MNX1P50219 401 aaPredicted RBP15.24■□□□□ 0.03
GPHN-215ENST00000557654 PLEKHG5O94827 1062 aa15.19■□□□□ 0.02
GPHN-215ENST00000557654 IFNLR1Q8IU57 520 aaPredicted RBP15.16■□□□□ 0.02
GPHN-215ENST00000557654 KLHL34Q8N239 644 aa15.11■□□□□ 0.01
GPHN-215ENST00000557654 HAX1O00165 279 aa15.07■□□□□ 0
GPHN-215ENST00000557654 NPM1P06748 294 aaKnown RBP eCLIP15.07■□□□□ 0
GPHN-215ENST00000557654 ZBTB47Q9UFB7 747 aaPredicted RBP15.05■□□□□ -0
GPHN-215ENST00000557654 C19orf67A6NJJ6 358 aa15.02■□□□□ -0
GPHN-215ENST00000557654 EVX2Q03828 476 aa15.01□□□□□ -0.01
GPHN-215ENST00000557654 CD44P16070 742 aaKnown RBP14.99□□□□□ -0.01
GPHN-215ENST00000557654 NUBP1P53384 320 aa14.98□□□□□ -0.01
GPHN-215ENST00000557654 RASEFQ8IZ41 740 aa14.98□□□□□ -0.01
GPHN-215ENST00000557654 SPOCK2Q92563 424 aa14.93□□□□□ -0.02
GPHN-215ENST00000557654 TSPYL2Q9H2G4 693 aaPredicted RBP14.93□□□□□ -0.02
GPHN-215ENST00000557654 ZRANB1Q9UGI0 708 aa14.89□□□□□ -0.03
GPHN-215ENST00000557654 PAK3O75914 559 aaPredicted RBP14.84□□□□□ -0.03
GPHN-215ENST00000557654 DCAF8Q5TAQ9 597 aa14.83□□□□□ -0.04
GPHN-215ENST00000557654 FAM212AQ96EL1 285 aa14.82□□□□□ -0.04
GPHN-215ENST00000557654 PHF12Q96QT6 1004 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms