RNA–Protein interactions for RNA: ENST00000489614.5

NOD1-208, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

TSL 2

Gene NOD1, Length 3,098 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-208ENST00000489614 NISCHQ9Y2I1 1504 aa22.36■■□□□ 1.17
NOD1-208ENST00000489614 CCDC180Q9P1Z9 1646 aa19.78■□□□□ 0.76
NOD1-208ENST00000489614 ZCCHC6Q5VYS8 1495 aaKnown RBP18.83■□□□□ 0.61
NOD1-208ENST00000489614 DCAF1Q9Y4B6 1507 aa18.67■□□□□ 0.58
NOD1-208ENST00000489614 MYO15BQ96JP2 1530 aa18.5■□□□□ 0.55
NOD1-208ENST00000489614 ABCC9O60706 1549 aa18.27■□□□□ 0.52
NOD1-208ENST00000489614 NACADO15069 1562 aa18.26■□□□□ 0.51
NOD1-208ENST00000489614 RB1CC1Q8TDY2 1594 aa18.07■□□□□ 0.48
NOD1-208ENST00000489614 UNC13AQ9UPW8 1703 aa18.01■□□□□ 0.47
NOD1-208ENST00000489614 SCRIBQ14160 1630 aa17.86■□□□□ 0.45
NOD1-208ENST00000489614 DCAF8L2P0C7V8 631 aa17.73■□□□□ 0.43
NOD1-208ENST00000489614 BICRAQ9NZM4 1560 aa17.68■□□□□ 0.42
NOD1-208ENST00000489614 SHROOM4Q9ULL8 1493 aa17.67■□□□□ 0.42
NOD1-208ENST00000489614 CECR2Q9BXF3 1484 aa17.27■□□□□ 0.35
NOD1-208ENST00000489614 SMARCA4P51532 1647 aa17.27■□□□□ 0.35
NOD1-208ENST00000489614 BAZ1AQ9NRL2 1556 aaPredicted RBP17.25■□□□□ 0.35
NOD1-208ENST00000489614 MROH2BQ7Z745 1585 aa17.23■□□□□ 0.35
NOD1-208ENST00000489614 RSF1Q96T23 1441 aaPredicted RBP17.21■□□□□ 0.35
NOD1-208ENST00000489614 PEG3Q9GZU2 1588 aa17.2■□□□□ 0.34
NOD1-208ENST00000489614 WIZO95785 1651 aa17.13■□□□□ 0.33
NOD1-208ENST00000489614 PABPN1Q86U42 306 aaKnown RBP eCLIP17.04■□□□□ 0.32
NOD1-208ENST00000489614 EIF4G1Q04637 1599 aaKnown RBP17.02■□□□□ 0.31
NOD1-208ENST00000489614 TOP2AP11388 1531 aaKnown RBP16.98■□□□□ 0.31
NOD1-208ENST00000489614 SMARCA2P51531 1590 aa16.91■□□□□ 0.3
NOD1-208ENST00000489614 ATAD2BQ9ULI0 1458 aa16.88■□□□□ 0.29
NOD1-208ENST00000489614 HMGXB3Q12766 1538 aa16.87■□□□□ 0.29
NOD1-208ENST00000489614 SUPT5HO00267 1087 aaKnown RBP16.85■□□□□ 0.29
NOD1-208ENST00000489614 NCAPD3P42695 1498 aa16.79■□□□□ 0.28
NOD1-208ENST00000489614 CC2D2AQ9P2K1 1620 aa16.78■□□□□ 0.28
NOD1-208ENST00000489614 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
NOD1-208ENST00000489614 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
NOD1-208ENST00000489614 PRDM2Q13029 1718 aa16.65■□□□□ 0.26
NOD1-208ENST00000489614 PELP1Q8IZL8 1130 aaKnown RBP16.62■□□□□ 0.25
NOD1-208ENST00000489614 CFTRP13569 1480 aa16.39■□□□□ 0.21
NOD1-208ENST00000489614 CHIC1Q5VXU3 224 aa16.34■□□□□ 0.21
NOD1-208ENST00000489614 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
NOD1-208ENST00000489614 LAMC3Q9Y6N6 1575 aa16.3■□□□□ 0.2
NOD1-208ENST00000489614 ABCC8Q09428 1581 aa16.28■□□□□ 0.2
NOD1-208ENST00000489614 SYNJ1O43426 1573 aa16.25■□□□□ 0.19
NOD1-208ENST00000489614 TOP2BQ02880 1626 aa16.23■□□□□ 0.19
NOD1-208ENST00000489614 HRCP23327 699 aa16.22■□□□□ 0.19
NOD1-208ENST00000489614 CADPSQ9ULU8 1353 aa16.21■□□□□ 0.19
NOD1-208ENST00000489614 DNAJC5BQ9UF47 199 aa16.18■□□□□ 0.18
NOD1-208ENST00000489614 KIF21AQ7Z4S6 1674 aa16.16■□□□□ 0.18
NOD1-208ENST00000489614 CUX1P39880 1505 aa16.14■□□□□ 0.17
NOD1-208ENST00000489614 MYT1Q01538 1121 aa16.13■□□□□ 0.17
NOD1-208ENST00000489614 NESP48681 1621 aa16.12■□□□□ 0.17
NOD1-208ENST00000489614 PPARGC1BQ86YN6 1023 aaKnown RBP16.11■□□□□ 0.17
NOD1-208ENST00000489614 WRNQ14191 1432 aaPredicted RBP eCLIP16.11■□□□□ 0.17
NOD1-208ENST00000489614 WDR97A6NE52 1622 aa16.06■□□□□ 0.16
NOD1-208ENST00000489614 FANCD2Q9BXW9 1451 aa16.06■□□□□ 0.16
NOD1-208ENST00000489614 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
NOD1-208ENST00000489614 URB2Q14146 1524 aaKnown RBP15.97■□□□□ 0.15
NOD1-208ENST00000489614 CEP164Q9UPV0 1460 aa15.96■□□□□ 0.15
NOD1-208ENST00000489614 THOC2Q8NI27 1593 aaKnown RBP15.96■□□□□ 0.15
NOD1-208ENST00000489614 TOPBP1Q92547 1522 aa15.95■□□□□ 0.14
NOD1-208ENST00000489614 PDS5BQ9NTI5 1447 aa15.94■□□□□ 0.14
NOD1-208ENST00000489614 TRIM41Q8WV44 630 aa15.93■□□□□ 0.14
NOD1-208ENST00000489614 WDR62O43379 1518 aa15.92■□□□□ 0.14
NOD1-208ENST00000489614 EEA1Q15075 1411 aa15.9■□□□□ 0.14
NOD1-208ENST00000489614 TARBP1Q13395 1621 aaKnown RBP15.89■□□□□ 0.13
NOD1-208ENST00000489614 KIF21BO75037 1637 aa15.88■□□□□ 0.13
NOD1-208ENST00000489614 FGD5Q6ZNL6 1462 aa15.88■□□□□ 0.13
NOD1-208ENST00000489614 RUSC2Q8N2Y8 1516 aa15.87■□□□□ 0.13
NOD1-208ENST00000489614 SOGA1O94964 1423 aa15.87■□□□□ 0.13
NOD1-208ENST00000489614 MRC2Q9UBG0 1479 aa15.85■□□□□ 0.13
NOD1-208ENST00000489614 SCAF1Q9H7N4 1312 aaKnown RBP15.85■□□□□ 0.13
NOD1-208ENST00000489614 ABCA5Q8WWZ7 1642 aa15.85■□□□□ 0.13
NOD1-208ENST00000489614 POLA1P09884 1462 aaPredicted RBP15.85■□□□□ 0.13
NOD1-208ENST00000489614 ABCA10Q8WWZ4 1543 aa15.83■□□□□ 0.12
NOD1-208ENST00000489614 CUX2O14529 1486 aa15.76■□□□□ 0.11
NOD1-208ENST00000489614 ERICH3Q5RHP9 1530 aa15.76■□□□□ 0.11
NOD1-208ENST00000489614 PBRM1Q86U86 1689 aa15.75■□□□□ 0.11
NOD1-208ENST00000489614 PCGF6Q9BYE7 350 aa15.75■□□□□ 0.11
NOD1-208ENST00000489614 PRXQ9BXM0 1461 aa15.73■□□□□ 0.11
NOD1-208ENST00000489614 CUL7Q14999 1698 aa15.72■□□□□ 0.11
NOD1-208ENST00000489614 RAD54L2Q9Y4B4 1467 aa15.7■□□□□ 0.1
NOD1-208ENST00000489614 KIF27Q86VH2 1401 aa15.68■□□□□ 0.1
NOD1-208ENST00000489614 GOLGA3Q08378 1498 aa15.64■□□□□ 0.09
NOD1-208ENST00000489614 IFT140Q96RY7 1462 aa15.64■□□□□ 0.09
NOD1-208ENST00000489614 EIF4G3O43432 1585 aaKnown RBP15.61■□□□□ 0.09
NOD1-208ENST00000489614 CSRNP3Q8WYN3 585 aa15.6■□□□□ 0.09
NOD1-208ENST00000489614 ERCC6Q03468 1493 aa15.6■□□□□ 0.09
NOD1-208ENST00000489614 IGF1RP08069 1367 aa15.6■□□□□ 0.09
NOD1-208ENST00000489614 RAPGEF2Q9Y4G8 1499 aa15.6■□□□□ 0.09
NOD1-208ENST00000489614 CTTNBP2Q8WZ74 1663 aa15.6■□□□□ 0.09
NOD1-208ENST00000489614 ADAMTS12P58397 1594 aa15.58■□□□□ 0.08
NOD1-208ENST00000489614 TNIKQ9UKE5 1360 aa15.57■□□□□ 0.08
NOD1-208ENST00000489614 LOC105371045A0A1W2PR82 267 aa15.57■□□□□ 0.08
NOD1-208ENST00000489614 GAPVD1Q14C86 1478 aa15.54■□□□□ 0.08
NOD1-208ENST00000489614 ZNF608Q9ULD9 1512 aaPredicted RBP15.51■□□□□ 0.07
NOD1-208ENST00000489614 FAM9AQ8IZU1 332 aaPredicted RBP15.48■□□□□ 0.07
NOD1-208ENST00000489614 GRIN2BQ13224 1484 aa15.46■□□□□ 0.07
NOD1-208ENST00000489614 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
NOD1-208ENST00000489614 CARMIL1Q5VZK9 1371 aa15.43■□□□□ 0.06
NOD1-208ENST00000489614 AQRO60306 1485 aaKnown RBP eCLIP15.42■□□□□ 0.06
NOD1-208ENST00000489614 TDRD9Q8NDG6 1382 aaKnown RBP15.42■□□□□ 0.06
NOD1-208ENST00000489614 MAGI1Q96QZ7 1491 aaPredicted RBP15.41■□□□□ 0.06
NOD1-208ENST00000489614 SAMD9Q5K651 1589 aa15.41■□□□□ 0.06
NOD1-208ENST00000489614 FHAD1B1AJZ9 1412 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms