RNA–Protein interactions for RNA: ENST00000555668.5

GPHN-210, Transcript of gephyrin, humanhuman

TSL 4

Gene GPHN, Length 550 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-210ENST00000555668 AEBP2Q6ZN18 517 aaPredicted RBP17.36■□□□□ 0.37
GPHN-210ENST00000555668 CHIC1Q5VXU3 224 aa16.71■□□□□ 0.27
GPHN-210ENST00000555668 SENP3Q9H4L4 574 aaPredicted RBP14.81□□□□□ -0.04
GPHN-210ENST00000555668 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
GPHN-210ENST00000555668 FOXD1Q16676 465 aa13.76□□□□□ -0.21
GPHN-210ENST00000555668 PLPPR3Q6T4P5 718 aa13.46□□□□□ -0.25
GPHN-210ENST00000555668 PPP6R1Q9UPN7 881 aa13.02□□□□□ -0.33
GPHN-210ENST00000555668 ADRA2BP18089 450 aa13□□□□□ -0.33
GPHN-210ENST00000555668 PIAS4Q8N2W9 510 aaPredicted RBP12.92□□□□□ -0.34
GPHN-210ENST00000555668 MSH5O43196 834 aa12.83□□□□□ -0.36
GPHN-210ENST00000555668 POTEDQ86YR6 584 aa12.14□□□□□ -0.47
GPHN-210ENST00000555668 SCAF1Q9H7N4 1312 aaKnown RBP11.94□□□□□ -0.5
GPHN-210ENST00000555668 MAPK8IP2Q13387 824 aaPredicted RBP11.87□□□□□ -0.51
GPHN-210ENST00000555668 PPP4R3CPQ6ZMV5 832 aa11.82□□□□□ -0.52
GPHN-210ENST00000555668 DMRT2Q9Y5R5 561 aa11.77□□□□□ -0.53
GPHN-210ENST00000555668 CNKSR2Q8WXI2 1034 aa11.56□□□□□ -0.56
GPHN-210ENST00000555668 NCBP3Q53F19 620 aaKnown RBP11.46□□□□□ -0.57
GPHN-210ENST00000555668 HOXD11P31277 338 aaPredicted RBP11.42□□□□□ -0.58
GPHN-210ENST00000555668 RNF216Q9NWF9 866 aaPredicted RBP11.4□□□□□ -0.58
GPHN-210ENST00000555668 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
GPHN-210ENST00000555668 NPM3O75607 178 aaKnown RBP11.25□□□□□ -0.61
GPHN-210ENST00000555668 KCNA4P22459 653 aa11.22□□□□□ -0.61
GPHN-210ENST00000555668 DNAJC5BQ9UF47 199 aa11□□□□□ -0.65
GPHN-210ENST00000555668 RNF39Q9H2S5 420 aa10.95□□□□□ -0.66
GPHN-210ENST00000555668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.9□□□□□ -0.66
GPHN-210ENST00000555668 CACNB1Q02641 598 aaPredicted RBP10.88□□□□□ -0.67
GPHN-210ENST00000555668 C1QBPQ07021 282 aaKnown RBP10.82□□□□□ -0.68
GPHN-210ENST00000555668 SLC4A2P04920 1241 aa10.69□□□□□ -0.7
GPHN-210ENST00000555668 U3KPZ7 1027 aaPredicted RBP10.67□□□□□ -0.7
GPHN-210ENST00000555668 SLC4A1APQ9BWU0 796 aaKnown RBP10.65□□□□□ -0.7
GPHN-210ENST00000555668 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.48□□□□□ -0.73
GPHN-210ENST00000555668 HNRNPUL2Q1KMD3 747 aaKnown RBP10.48□□□□□ -0.73
GPHN-210ENST00000555668 CAPN15O75808 1086 aa10.44□□□□□ -0.74
GPHN-210ENST00000555668 APLP2Q06481 763 aa10.44□□□□□ -0.74
GPHN-210ENST00000555668 SPINK5Q9NQ38 1064 aaPredicted RBP10.44□□□□□ -0.74
GPHN-210ENST00000555668 MYCNP04198 464 aaPredicted RBP10.42□□□□□ -0.74
GPHN-210ENST00000555668 SAMD1Q6SPF0 538 aaPredicted RBP10.42□□□□□ -0.74
GPHN-210ENST00000555668 FOXD4L1Q9NU39 408 aa10.42□□□□□ -0.74
GPHN-210ENST00000555668 TRHP20396 242 aaPredicted RBP10.32□□□□□ -0.76
GPHN-210ENST00000555668 DSG3P32926 999 aa10.32□□□□□ -0.76
GPHN-210ENST00000555668 ZNF219Q9P2Y4 722 aaPredicted RBP10.32□□□□□ -0.76
GPHN-210ENST00000555668 ZBTB22O15209 634 aa10.3□□□□□ -0.76
GPHN-210ENST00000555668 ABCB7O75027 752 aa10.21□□□□□ -0.77
GPHN-210ENST00000555668 ATF5Q9Y2D1 282 aaPredicted RBP10.13□□□□□ -0.79
GPHN-210ENST00000555668 ATXN8OSP0DMR3 200 aa10.09□□□□□ -0.79
GPHN-210ENST00000555668 POLA2Q14181 598 aa10.09□□□□□ -0.79
GPHN-210ENST00000555668 CSRNP3Q8WYN3 585 aa10.03□□□□□ -0.8
GPHN-210ENST00000555668 EHMT2Q96KQ7 1210 aa10.01□□□□□ -0.81
GPHN-210ENST00000555668 ZBTB12Q9Y330 459 aaPredicted RBP9.92□□□□□ -0.82
GPHN-210ENST00000555668 RBM42Q9BTD8 480 aaKnown RBP9.87□□□□□ -0.83
GPHN-210ENST00000555668 FBLN2P98095 1184 aa9.77□□□□□ -0.85
GPHN-210ENST00000555668 OSCARQ8IYS5 282 aa9.75□□□□□ -0.85
GPHN-210ENST00000555668 MKRN4PQ13434 485 aaPredicted RBP9.68□□□□□ -0.86
GPHN-210ENST00000555668 AKT1S1Q96B36 256 aa9.68□□□□□ -0.86
GPHN-210ENST00000555668 SPDYE2BA6NHP3 402 aa9.63□□□□□ -0.87
GPHN-210ENST00000555668 SPDYE6P0CI01 402 aa9.63□□□□□ -0.87
GPHN-210ENST00000555668 SPDYE2Q495Y8 402 aa9.63□□□□□ -0.87
GPHN-210ENST00000555668 REM2Q8IYK8 340 aaPredicted RBP9.57□□□□□ -0.88
GPHN-210ENST00000555668 POTEHQ6S545 545 aa9.56□□□□□ -0.88
GPHN-210ENST00000555668 CHRDL2Q6WN34 429 aa9.55□□□□□ -0.88
GPHN-210ENST00000555668 ZNF692Q9BU19 519 aaPredicted RBP9.54□□□□□ -0.88
GPHN-210ENST00000555668 SSUH2Q9Y2M2 353 aa9.51□□□□□ -0.89
GPHN-210ENST00000555668 PITPNM1O00562 1244 aa9.46□□□□□ -0.9
GPHN-210ENST00000555668 SPDYE1Q8NFV5 336 aaPredicted RBP9.41□□□□□ -0.9
GPHN-210ENST00000555668 PABPN1Q86U42 306 aaKnown RBP eCLIP9.4□□□□□ -0.9
GPHN-210ENST00000555668 CLEC11AQ9Y240 323 aa9.38□□□□□ -0.91
GPHN-210ENST00000555668 SPDYE4A6NLX3 237 aa9.36□□□□□ -0.91
GPHN-210ENST00000555668 PIP4P2Q8N4L2 257 aa9.36□□□□□ -0.91
GPHN-210ENST00000555668 FXR2P51116 673 aaKnown RBP eCLIP9.35□□□□□ -0.91
GPHN-210ENST00000555668 PRR29P0C7W0 189 aa9.26□□□□□ -0.93
GPHN-210ENST00000555668 PRKAR2AP13861 404 aaKnown RBP9.23□□□□□ -0.93
GPHN-210ENST00000555668 STAG3Q9UJ98 1225 aa9.21□□□□□ -0.94
GPHN-210ENST00000555668 HAX1O00165 279 aa9.16□□□□□ -0.94
GPHN-210ENST00000555668 CHADLQ6NUI6 762 aa9.16□□□□□ -0.94
GPHN-210ENST00000555668 PROM2Q8N271 834 aa9.14□□□□□ -0.95
GPHN-210ENST00000555668 FKBP8Q14318 412 aa9.09□□□□□ -0.95
GPHN-210ENST00000555668 SP7Q8TDD2 431 aaPredicted RBP9.07□□□□□ -0.96
GPHN-210ENST00000555668 CREBZFQ9NS37 354 aa9.06□□□□□ -0.96
GPHN-210ENST00000555668 FARP1Q9Y4F1 1045 aaPredicted RBP9.06□□□□□ -0.96
GPHN-210ENST00000555668 C19orf67A6NJJ6 358 aa9.04□□□□□ -0.96
GPHN-210ENST00000555668 EVX2Q03828 476 aa9.02□□□□□ -0.97
GPHN-210ENST00000555668 CD44P16070 742 aaKnown RBP8.95□□□□□ -0.98
GPHN-210ENST00000555668 NPM1P06748 294 aaKnown RBP eCLIP8.93□□□□□ -0.98
GPHN-210ENST00000555668 MNX1P50219 401 aaPredicted RBP8.92□□□□□ -0.98
GPHN-210ENST00000555668 MIER1Q8N108 512 aa8.92□□□□□ -0.98
GPHN-210ENST00000555668 PLEKHG5O94827 1062 aa8.91□□□□□ -0.98
GPHN-210ENST00000555668 FBXO3Q9UK99 471 aa8.88□□□□□ -0.99
GPHN-210ENST00000555668 PLCD3Q8N3E9 789 aa8.87□□□□□ -0.99
GPHN-210ENST00000555668 GABBR2O75899 941 aa8.86□□□□□ -0.99
GPHN-210ENST00000555668 ZRANB1Q9UGI0 708 aa8.86□□□□□ -0.99
GPHN-210ENST00000555668 PAK3O75914 559 aaPredicted RBP8.85□□□□□ -0.99
GPHN-210ENST00000555668 CLCN6P51797 869 aa8.82□□□□□ -1
GPHN-210ENST00000555668 ZNF579Q8NAF0 562 aaKnown RBP8.82□□□□□ -1
GPHN-210ENST00000555668 ZBTB47Q9UFB7 747 aaPredicted RBP8.81□□□□□ -1
GPHN-210ENST00000555668 TSPYL2Q9H2G4 693 aaPredicted RBP8.75□□□□□ -1.01
GPHN-210ENST00000555668 VASPP50552 380 aaPredicted RBP8.74□□□□□ -1.01
GPHN-210ENST00000555668 PHF12Q96QT6 1004 aa8.74□□□□□ -1.01
GPHN-210ENST00000555668 RASEFQ8IZ41 740 aa8.72□□□□□ -1.01
GPHN-210ENST00000555668 NUBP1P53384 320 aa8.69□□□□□ -1.02
GPHN-210ENST00000555668 CCDC61Q9Y6R9 512 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms