Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 FBL-202ENST00000593503 628 ntTSL 37.8□□□□□ -1.164e-6■□□□□ 9.2
DDX55Q8NHQ9 DHX15-209ENST00000513036 1848 ntTSL 27.43□□□□□ -1.224e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-219ENST00000618105 544 ntTSL 27.33□□□□□ -1.244e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-217ENST00000617133 591 ntTSL 26.1□□□□□ -1.434e-6■□□□□ 9.2
DDX55Q8NHQ9 PSMB1-202ENST00000462957 1939 ntTSL 25.63□□□□□ -1.517e-7■□□□□ 9.2
DDX55Q8NHQ9 DHX15-208ENST00000512903 2071 ntTSL 25.42□□□□□ -1.544e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-220ENST00000619259 462 ntTSL 25.3□□□□□ -1.564e-6■□□□□ 9.2
DDX55Q8NHQ9 RPN1-205ENST00000490166 573 ntTSL 34.78□□□□□ -1.644e-6■□□□□ 9.2
DDX55Q8NHQ9 DHX15-204ENST00000508032 3028 ntTSL 1 (best)4.08□□□□□ -1.764e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-209ENST00000482389 2773 ntTSL 22.66□□□□□ -1.984e-6■□□□□ 9.2
DDX55Q8NHQ9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.179e-7■□□□□ 9.2
DDX55Q8NHQ9 NDUFAB1-203ENST00000562133 503 ntTSL 218.84■□□□□ 0.619e-7■□□□□ 9.2
DDX55Q8NHQ9 NDUFAB1-202ENST00000484769 843 ntTSL 316.09■□□□□ 0.179e-7■□□□□ 9.2
DDX55Q8NHQ9 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.69■□□□□ 0.12e-15■□□□□ 9.2
DDX55Q8NHQ9 BRD1-204ENST00000438393 3051 ntTSL 214.72□□□□□ -0.052e-15■□□□□ 9.2
DDX55Q8NHQ9 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.122e-15■□□□□ 9.2
DDX55Q8NHQ9 BRD1-202ENST00000404034 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.342e-15■□□□□ 9.2
DDX55Q8NHQ9 BRD1-203ENST00000404760 4550 ntTSL 2 BASIC12.84□□□□□ -0.352e-15■□□□□ 9.2
DDX55Q8NHQ9 CFB-277ENST00000467360 1082 ntTSL 59.96□□□□□ -0.822e-15■□□□□ 9.2
DDX55Q8NHQ9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.591e-6■□□□□ 9.2
DDX55Q8NHQ9 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC7.4□□□□□ -1.224e-29■□□□□ 9.2
DDX55Q8NHQ9 TGFBI-204ENST00000504411 1033 ntTSL 210.54□□□□□ -0.723e-7■□□□□ 9.2
DDX55Q8NHQ9 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.52e-19■□□□□ 9.2
DDX55Q8NHQ9 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.476e-72■□□□□ 9.2
DDX55Q8NHQ9 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.352e-14■□□□□ 9.2
DDX55Q8NHQ9 C3-218ENST00000602229 585 ntTSL 212.45□□□□□ -0.421e-37■□□□□ 9.2
DDX55Q8NHQ9 C3-211ENST00000599668 627 ntTSL 311.51□□□□□ -0.571e-37■□□□□ 9.2
DDX55Q8NHQ9 RHEB-205ENST00000478470 1153 ntTSL 531.08■■■□□ 2.571e-8■□□□□ 9.2
DDX55Q8NHQ9 TROAP-216ENST00000551567 577 ntAPPRIS ALT2 TSL 328.65■■■□□ 2.183e-11■□□□□ 9.2
DDX55Q8NHQ9 IRF3-220ENST00000598108 1118 ntTSL 327.79■■■□□ 2.047e-6■□□□□ 9.2
DDX55Q8NHQ9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.031e-8■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-202ENST00000475108 492 ntTSL 326.92■■□□□ 1.93e-11■□□□□ 9.2
DDX55Q8NHQ9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.795e-10■□□□□ 9.2
DDX55Q8NHQ9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.2■■□□□ 1.782e-7■□□□□ 9.2
DDX55Q8NHQ9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.781e-12■□□□□ 9.2
DDX55Q8NHQ9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.751e-8■□□□□ 9.2
DDX55Q8NHQ9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC25.69■■□□□ 1.72e-7■□□□□ 9.2
DDX55Q8NHQ9 MED15-210ENST00000432052 598 ntTSL 425.69■■□□□ 1.77e-6■□□□□ 9.2
DDX55Q8NHQ9 MED15-225ENST00000477824 571 ntTSL 525.49■■□□□ 1.677e-6■□□□□ 9.2
DDX55Q8NHQ9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.617e-6■□□□□ 9.2
DDX55Q8NHQ9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.67e-6■□□□□ 9.2
DDX55Q8NHQ9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC25.03■■□□□ 1.61e-8■□□□□ 9.2
DDX55Q8NHQ9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.592e-7■□□□□ 9.2
DDX55Q8NHQ9 MHENCR-201ENST00000411579 582 ntTSL 224.7■■□□□ 1.542e-7■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.461e-12■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC24.15■■□□□ 1.467e-6■□□□□ 9.2
DDX55Q8NHQ9 MED15-215ENST00000444094 551 ntTSL 424.1■■□□□ 1.457e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.397e-6■□□□□ 9.2
DDX55Q8NHQ9 FASTK-206ENST00000465272 457 ntTSL 223.63■■□□□ 1.371e-8■□□□□ 9.2
DDX55Q8NHQ9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC23.56■■□□□ 1.367e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.43■■□□□ 1.347e-6■□□□□ 9.2
DDX55Q8NHQ9 IRF3-231ENST00000602190 413 ntTSL 323.3■■□□□ 1.327e-6■□□□□ 9.2
DDX55Q8NHQ9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.323e-11■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-207ENST00000596335 725 ntAPPRIS ALT2 TSL 323.22■■□□□ 1.317e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-216ENST00000601436 648 ntAPPRIS ALT2 TSL 323.22■■□□□ 1.317e-6■□□□□ 9.2
DDX55Q8NHQ9 ATXN2L-207ENST00000561732 643 ntTSL 223.16■■□□□ 1.34e-38■□□□□ 9.2
DDX55Q8NHQ9 STXBP2-208ENST00000595800 1974 ntTSL 223.14■■□□□ 1.37e-6■□□□□ 9.2
DDX55Q8NHQ9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC22.96■■□□□ 1.275e-10■□□□□ 9.2
DDX55Q8NHQ9 MED15-205ENST00000414658 717 ntTSL 322.77■■□□□ 1.247e-6■□□□□ 9.2
DDX55Q8NHQ9 MED15-227ENST00000486656 577 ntTSL 422.77■■□□□ 1.247e-6■□□□□ 9.2
DDX55Q8NHQ9 STXBP2-205ENST00000593854 704 ntTSL 222.7■■□□□ 1.227e-6■□□□□ 9.2
DDX55Q8NHQ9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.194e-9■□□□□ 9.2
DDX55Q8NHQ9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC22.45■■□□□ 1.192e-7■□□□□ 9.2
DDX55Q8NHQ9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.187e-6■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-217ENST00000593194 721 ntAPPRIS ALT2 TSL 222.34■■□□□ 1.171e-12■□□□□ 9.2
DDX55Q8NHQ9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.173e-11■□□□□ 9.2
DDX55Q8NHQ9 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.28■■□□□ 1.162e-7■□□□□ 9.2
DDX55Q8NHQ9 ARHGEF1-205ENST00000593609 576 ntTSL 222.28■■□□□ 1.167e-6■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.151e-12■□□□□ 9.2
DDX55Q8NHQ9 PCTP-203ENST00000417982 2234 ntTSL 222.04■■□□□ 1.122e-7■□□□□ 9.2
DDX55Q8NHQ9 C21orf59-207ENST00000458138 863 ntTSL 321.75■■□□□ 1.077e-6■□□□□ 9.2
DDX55Q8NHQ9 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.067e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.067e-6■□□□□ 9.2
DDX55Q8NHQ9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC21.46■■□□□ 1.032e-7■□□□□ 9.2
DDX55Q8NHQ9 LEPROT-205ENST00000497874 377 ntTSL 1 (best)21.42■■□□□ 1.023e-11■□□□□ 9.2
DDX55Q8NHQ9 GOLGA2-209ENST00000490257 1964 ntTSL 221.23■□□□□ 0.992e-7■□□□□ 9.2
DDX55Q8NHQ9 MAP2K2-210ENST00000601786 1778 ntTSL 221.23■□□□□ 0.995e-10■□□□□ 9.2
DDX55Q8NHQ9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.992e-7■□□□□ 9.2
DDX55Q8NHQ9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC21.02■□□□□ 0.967e-6■□□□□ 9.2
DDX55Q8NHQ9 MOB1B-205ENST00000511449 627 ntTSL 321.02■□□□□ 0.967e-6■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.941e-12■□□□□ 9.2
DDX55Q8NHQ9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.92e-7■□□□□ 9.2
DDX55Q8NHQ9 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.53■□□□□ 0.887e-6■□□□□ 9.2
DDX55Q8NHQ9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.871e-12■□□□□ 9.2
DDX55Q8NHQ9 ATXN2L-212ENST00000564035 786 ntTSL 220.45■□□□□ 0.864e-38■□□□□ 9.2
DDX55Q8NHQ9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.4■□□□□ 0.862e-16■□□□□ 9.2
DDX55Q8NHQ9 C6orf136-206ENST00000463794 445 ntTSL 320.39■□□□□ 0.857e-6■□□□□ 9.2
DDX55Q8NHQ9 MAPK3-213ENST00000485579 739 ntTSL 220.37■□□□□ 0.853e-16■□□□□ 9.2
DDX55Q8NHQ9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.29■□□□□ 0.845e-19■□□□□ 9.2
DDX55Q8NHQ9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.27■□□□□ 0.832e-7■□□□□ 9.2
DDX55Q8NHQ9 COL18A1-205ENST00000423214 839 ntTSL 520.17■□□□□ 0.821e-8■□□□□ 9.2
DDX55Q8NHQ9 MOB1B-203ENST00000502869 760 ntTSL 320.03■□□□□ 0.87e-6■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-205ENST00000595393 1471 ntTSL 219.9■□□□□ 0.787e-6■□□□□ 9.2
DDX55Q8NHQ9 MED15-217ENST00000445987 590 ntTSL 419.86■□□□□ 0.777e-6■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.83■□□□□ 0.771e-12■□□□□ 9.2
DDX55Q8NHQ9 TNNT1-207ENST00000587089 880 ntTSL 519.83■□□□□ 0.771e-12■□□□□ 9.2
DDX55Q8NHQ9 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.753e-10■□□□□ 9.2
DDX55Q8NHQ9 BABAM1-214ENST00000601171 513 ntTSL 519.72■□□□□ 0.757e-6■□□□□ 9.2
DDX55Q8NHQ9 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC19.62■□□□□ 0.737e-6■□□□□ 9.2
DDX55Q8NHQ9 MRPL28-206ENST00000450882 619 ntTSL 319.56■□□□□ 0.722e-7■□□□□ 9.2
Retrieved 100 of 15,504 protein–RNA pairs in 122.7 ms