RNA–Protein interactions for RNA: ENST00000338176.8

RAB28-203, Transcript of RAB28, member RAS oncogene family, humanhuman

TSL 3 BASIC

Gene RAB28, Length 1,787 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-203ENST00000338176 NISCHQ9Y2I1 1504 aa51.5■■■■■ 5.83
RAB28-203ENST00000338176 CCDC180Q9P1Z9 1646 aa45.84■■■■■ 4.93
RAB28-203ENST00000338176 ABCC9O60706 1549 aa45.34■■■■■ 4.85
RAB28-203ENST00000338176 RB1CC1Q8TDY2 1594 aa43.33■■■■■ 4.53
RAB28-203ENST00000338176 DCAF8L2P0C7V8 631 aa43.29■■■■■ 4.52
RAB28-203ENST00000338176 NACADO15069 1562 aa43.18■■■■■ 4.5
RAB28-203ENST00000338176 ZCCHC6Q5VYS8 1495 aaKnown RBP42.82■■■■■ 4.45
RAB28-203ENST00000338176 MYO15BQ96JP2 1530 aa42.75■■■■■ 4.43
RAB28-203ENST00000338176 DCAF1Q9Y4B6 1507 aa42.48■■■■■ 4.39
RAB28-203ENST00000338176 UNC13AQ9UPW8 1703 aa42.47■■■■■ 4.39
RAB28-203ENST00000338176 PABPN1Q86U42 306 aaKnown RBP eCLIP42.37■■■■■ 4.37
RAB28-203ENST00000338176 BICRAQ9NZM4 1560 aa42.14■■■■■ 4.34
RAB28-203ENST00000338176 DNAJC5BQ9UF47 199 aa42■■■■■ 4.31
RAB28-203ENST00000338176 SCRIBQ14160 1630 aa41.97■■■■■ 4.31
RAB28-203ENST00000338176 SHROOM4Q9ULL8 1493 aa41.43■■■■■ 4.22
RAB28-203ENST00000338176 EIF4G1Q04637 1599 aaKnown RBP41.01■■■■■ 4.16
RAB28-203ENST00000338176 CC2D2AQ9P2K1 1620 aa40.96■■■■■ 4.15
RAB28-203ENST00000338176 CECR2Q9BXF3 1484 aa40.72■■■■■ 4.11
RAB28-203ENST00000338176 SMARCA4P51532 1647 aa40.04■■■■■ 4
RAB28-203ENST00000338176 ATAD2BQ9ULI0 1458 aa39.9■■■■□ 3.98
RAB28-203ENST00000338176 BAZ1AQ9NRL2 1556 aaPredicted RBP39.88■■■■□ 3.98
RAB28-203ENST00000338176 NCAPD3P42695 1498 aa39.88■■■■□ 3.97
RAB28-203ENST00000338176 SMARCA2P51531 1590 aa39.77■■■■□ 3.96
RAB28-203ENST00000338176 MROH2BQ7Z745 1585 aa39.75■■■■□ 3.95
RAB28-203ENST00000338176 HMGXB3Q12766 1538 aa39.63■■■■□ 3.93
RAB28-203ENST00000338176 PEG3Q9GZU2 1588 aa39.58■■■■□ 3.93
RAB28-203ENST00000338176 BAZ1BQ9UIG0 1483 aaKnown RBP39.54■■■■□ 3.92
RAB28-203ENST00000338176 WIZO95785 1651 aa39.32■■■■□ 3.89
RAB28-203ENST00000338176 NESP48681 1621 aa39.18■■■■□ 3.86
RAB28-203ENST00000338176 RSF1Q96T23 1441 aaPredicted RBP39.15■■■■□ 3.86
RAB28-203ENST00000338176 ERCC6Q03468 1493 aa39.03■■■■□ 3.84
RAB28-203ENST00000338176 LAMC3Q9Y6N6 1575 aa38.86■■■■□ 3.81
RAB28-203ENST00000338176 TOP2AP11388 1531 aaKnown RBP38.79■■■■□ 3.8
RAB28-203ENST00000338176 CADPSQ9ULU8 1353 aa38.73■■■■□ 3.79
RAB28-203ENST00000338176 CUX2O14529 1486 aa38.66■■■■□ 3.78
RAB28-203ENST00000338176 KIF21AQ7Z4S6 1674 aa38.66■■■■□ 3.78
RAB28-203ENST00000338176 PDS5BQ9NTI5 1447 aa38.61■■■■□ 3.77
RAB28-203ENST00000338176 THOC2Q8NI27 1593 aaKnown RBP38.56■■■■□ 3.76
RAB28-203ENST00000338176 CFTRP13569 1480 aa38.42■■■■□ 3.74
RAB28-203ENST00000338176 CCDC88BA6NC98 1476 aa38.4■■■■□ 3.74
RAB28-203ENST00000338176 FANCD2Q9BXW9 1451 aa38.3■■■■□ 3.72
RAB28-203ENST00000338176 MRC2Q9UBG0 1479 aa38.28■■■■□ 3.72
RAB28-203ENST00000338176 CEP164Q9UPV0 1460 aa38.26■■■■□ 3.72
RAB28-203ENST00000338176 WDR62O43379 1518 aa38.15■■■■□ 3.7
RAB28-203ENST00000338176 PRDM2Q13029 1718 aa38.08■■■■□ 3.69
RAB28-203ENST00000338176 SUPT5HO00267 1087 aaKnown RBP38.01■■■■□ 3.68
RAB28-203ENST00000338176 URB2Q14146 1524 aaKnown RBP37.99■■■■□ 3.67
RAB28-203ENST00000338176 DNAJC5Q9H3Z4 198 aa37.94■■■■□ 3.66
RAB28-203ENST00000338176 TOPBP1Q92547 1522 aa37.67■■■■□ 3.62
RAB28-203ENST00000338176 DNMBPQ6XZF7 1577 aa37.56■■■■□ 3.6
RAB28-203ENST00000338176 ABCC8Q09428 1581 aa37.51■■■■□ 3.59
RAB28-203ENST00000338176 IFT140Q96RY7 1462 aa37.45■■■■□ 3.59
RAB28-203ENST00000338176 ZNF608Q9ULD9 1512 aaPredicted RBP37.44■■■■□ 3.58
RAB28-203ENST00000338176 POLA1P09884 1462 aaPredicted RBP37.33■■■■□ 3.57
RAB28-203ENST00000338176 CUX1P39880 1505 aa37.31■■■■□ 3.56
RAB28-203ENST00000338176 TARBP1Q13395 1621 aaKnown RBP37.29■■■■□ 3.56
RAB28-203ENST00000338176 RAD54L2Q9Y4B4 1467 aa37.24■■■■□ 3.55
RAB28-203ENST00000338176 EIF4G3O43432 1585 aaKnown RBP37.22■■■■□ 3.55
RAB28-203ENST00000338176 FGD5Q6ZNL6 1462 aa37.21■■■■□ 3.55
RAB28-203ENST00000338176 AQRO60306 1485 aaKnown RBP eCLIP37.17■■■■□ 3.54
RAB28-203ENST00000338176 SOGA1O94964 1423 aa37.16■■■■□ 3.54
RAB28-203ENST00000338176 OSCARQ8IYS5 282 aa37.06■■■■□ 3.52
RAB28-203ENST00000338176 TDRD9Q8NDG6 1382 aaKnown RBP37.05■■■■□ 3.52
RAB28-203ENST00000338176 WDR97A6NE52 1622 aa36.89■■■■□ 3.5
RAB28-203ENST00000338176 WRNQ14191 1432 aaPredicted RBP eCLIP36.88■■■■□ 3.5
RAB28-203ENST00000338176 SYNJ1O43426 1573 aa36.88■■■■□ 3.5
RAB28-203ENST00000338176 CHD1O14646 1710 aa36.84■■■■□ 3.49
RAB28-203ENST00000338176 TOP2BQ02880 1626 aa36.83■■■■□ 3.49
RAB28-203ENST00000338176 BIVM-ERCC5R4GMW8 1640 aa36.83■■■■□ 3.49
RAB28-203ENST00000338176 FBLN2P98095 1184 aa36.8■■■■□ 3.48
RAB28-203ENST00000338176 SNAPC4Q5SXM2 1469 aa36.79■■■■□ 3.48
RAB28-203ENST00000338176 ABCA10Q8WWZ4 1543 aa36.77■■■■□ 3.48
RAB28-203ENST00000338176 GRIN2BQ13224 1484 aa36.73■■■■□ 3.47
RAB28-203ENST00000338176 GAPVD1Q14C86 1478 aa36.72■■■■□ 3.47
RAB28-203ENST00000338176 ABCA5Q8WWZ7 1642 aa36.68■■■■□ 3.46
RAB28-203ENST00000338176 PBRM1Q86U86 1689 aa36.68■■■■□ 3.46
RAB28-203ENST00000338176 TRIM41Q8WV44 630 aa36.66■■■■□ 3.46
RAB28-203ENST00000338176 MAGI1Q96QZ7 1491 aaPredicted RBP36.64■■■■□ 3.46
RAB28-203ENST00000338176 CHMP7Q8WUX9 453 aaPredicted RBP36.58■■■■□ 3.45
RAB28-203ENST00000338176 RIMBP3CA6NJZ7 1639 aa36.56■■■■□ 3.44
RAB28-203ENST00000338176 RIMBP3BA6NNM3 1639 aa36.56■■■■□ 3.44
RAB28-203ENST00000338176 RIMBP3Q9UFD9 1639 aa36.56■■■■□ 3.44
RAB28-203ENST00000338176 SYNJ2O15056 1496 aa36.53■■■■□ 3.44
RAB28-203ENST00000338176 ARHGEF11O15085 1522 aa36.5■■■■□ 3.43
RAB28-203ENST00000338176 CLASP1Q7Z460 1538 aa36.39■■■■□ 3.42
RAB28-203ENST00000338176 ADAMTS12P58397 1594 aa36.36■■■■□ 3.41
RAB28-203ENST00000338176 ERICH3Q5RHP9 1530 aa36.3■■■■□ 3.4
RAB28-203ENST00000338176 GRIN2AQ12879 1464 aa36.28■■■■□ 3.4
RAB28-203ENST00000338176 FHAD1B1AJZ9 1412 aa36.25■■■■□ 3.39
RAB28-203ENST00000338176 CYB5RLQ6IPT4 315 aa36.22■■■■□ 3.39
RAB28-203ENST00000338176 ARAP1Q96P48 1450 aa36.21■■■■□ 3.39
RAB28-203ENST00000338176 CEP170Q5SW79 1584 aa36.17■■■■□ 3.38
RAB28-203ENST00000338176 NUP160Q12769 1436 aa36.12■■■■□ 3.37
RAB28-203ENST00000338176 KIF27Q86VH2 1401 aa36.11■■■■□ 3.37
RAB28-203ENST00000338176 IGF1RP08069 1367 aa36.07■■■■□ 3.36
RAB28-203ENST00000338176 ERCC6L2Q5T890 1561 aa35.98■■■■□ 3.35
RAB28-203ENST00000338176 CUL7Q14999 1698 aa35.9■■■■□ 3.34
RAB28-203ENST00000338176 SHROOM2Q13796 1616 aa35.88■■■■□ 3.34
RAB28-203ENST00000338176 RUSC2Q8N2Y8 1516 aa35.86■■■■□ 3.33
RAB28-203ENST00000338176 CARMIL1Q5VZK9 1371 aa35.83■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms