RNA–Protein interactions for RNA: ENST00000423214.1

COL18A1-205, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 5

Gene COL18A1, Length 839 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-205ENST00000423214 NISCHQ9Y2I1 1504 aa40.52■■■■■ 4.08
COL18A1-205ENST00000423214 CCDC180Q9P1Z9 1646 aa36.53■■■■□ 3.44
COL18A1-205ENST00000423214 ABCC9O60706 1549 aa36.31■■■■□ 3.4
COL18A1-205ENST00000423214 RB1CC1Q8TDY2 1594 aa34.68■■■■□ 3.14
COL18A1-205ENST00000423214 NACADO15069 1562 aa34.4■■■■□ 3.1
COL18A1-205ENST00000423214 DCAF8L2P0C7V8 631 aa34.07■■■■□ 3.04
COL18A1-205ENST00000423214 UNC13AQ9UPW8 1703 aa34.03■■■■□ 3.04
COL18A1-205ENST00000423214 MYO15BQ96JP2 1530 aa33.9■■■■□ 3.02
COL18A1-205ENST00000423214 DNAJC5BQ9UF47 199 aa33.81■■■■□ 3
COL18A1-205ENST00000423214 PABPN1Q86U42 306 aaKnown RBP eCLIP33.68■■■□□ 2.982e-15■■□□□ 14.3
COL18A1-205ENST00000423214 ZCCHC6Q5VYS8 1495 aaKnown RBP33.62■■■□□ 2.97
COL18A1-205ENST00000423214 BICRAQ9NZM4 1560 aa33.6■■■□□ 2.97
COL18A1-205ENST00000423214 DCAF1Q9Y4B6 1507 aa33.49■■■□□ 2.95
COL18A1-205ENST00000423214 SCRIBQ14160 1630 aa33.23■■■□□ 2.91
COL18A1-205ENST00000423214 SHROOM4Q9ULL8 1493 aa33.2■■■□□ 2.91
COL18A1-205ENST00000423214 CC2D2AQ9P2K1 1620 aa32.87■■■□□ 2.85
COL18A1-205ENST00000423214 EIF4G1Q04637 1599 aaKnown RBP32.8■■■□□ 2.84
COL18A1-205ENST00000423214 CECR2Q9BXF3 1484 aa32.7■■■□□ 2.83
COL18A1-205ENST00000423214 SMARCA4P51532 1647 aa31.69■■■□□ 2.66
COL18A1-205ENST00000423214 NCAPD3P42695 1498 aa31.65■■■□□ 2.66
COL18A1-205ENST00000423214 SMARCA2P51531 1590 aa31.61■■■□□ 2.65
COL18A1-205ENST00000423214 ATAD2BQ9ULI0 1458 aa31.59■■■□□ 2.65
COL18A1-205ENST00000423214 HMGXB3Q12766 1538 aa31.56■■■□□ 2.64
COL18A1-205ENST00000423214 BAZ1AQ9NRL2 1556 aaPredicted RBP31.51■■■□□ 2.63
COL18A1-205ENST00000423214 ERCC6Q03468 1493 aa31.41■■■□□ 2.62
COL18A1-205ENST00000423214 BAZ1BQ9UIG0 1483 aaKnown RBP31.36■■■□□ 2.61
COL18A1-205ENST00000423214 PEG3Q9GZU2 1588 aa31.34■■■□□ 2.61
COL18A1-205ENST00000423214 CUX2O14529 1486 aa31.32■■■□□ 2.6
COL18A1-205ENST00000423214 MROH2BQ7Z745 1585 aa31.21■■■□□ 2.59
COL18A1-205ENST00000423214 NESP48681 1621 aa31.19■■■□□ 2.58
COL18A1-205ENST00000423214 DNAJC5Q9H3Z4 198 aa31.08■■■□□ 2.57
COL18A1-205ENST00000423214 LAMC3Q9Y6N6 1575 aa31.08■■■□□ 2.57
COL18A1-205ENST00000423214 THOC2Q8NI27 1593 aaKnown RBP30.99■■■□□ 2.55
COL18A1-205ENST00000423214 KIF21AQ7Z4S6 1674 aa30.98■■■□□ 2.55
COL18A1-205ENST00000423214 WIZO95785 1651 aa30.93■■■□□ 2.54
COL18A1-205ENST00000423214 PDS5BQ9NTI5 1447 aa30.8■■■□□ 2.52
COL18A1-205ENST00000423214 CADPSQ9ULU8 1353 aa30.67■■■□□ 2.5
COL18A1-205ENST00000423214 MRC2Q9UBG0 1479 aa30.58■■■□□ 2.49
COL18A1-205ENST00000423214 TOP2AP11388 1531 aaKnown RBP30.53■■■□□ 2.48
COL18A1-205ENST00000423214 WDR62O43379 1518 aa30.52■■■□□ 2.48
COL18A1-205ENST00000423214 RSF1Q96T23 1441 aaPredicted RBP30.51■■■□□ 2.47
COL18A1-205ENST00000423214 CEP164Q9UPV0 1460 aa30.49■■■□□ 2.47
COL18A1-205ENST00000423214 FANCD2Q9BXW9 1451 aa30.41■■■□□ 2.46
COL18A1-205ENST00000423214 PRDM2Q13029 1718 aa30.41■■■□□ 2.46
COL18A1-205ENST00000423214 CFTRP13569 1480 aa30.38■■■□□ 2.45
COL18A1-205ENST00000423214 URB2Q14146 1524 aaKnown RBP30.15■■■□□ 2.42
COL18A1-205ENST00000423214 CCDC88BA6NC98 1476 aa30.06■■■□□ 2.4
COL18A1-205ENST00000423214 TOPBP1Q92547 1522 aa29.85■■■□□ 2.37
COL18A1-205ENST00000423214 IFT140Q96RY7 1462 aa29.84■■■□□ 2.37
COL18A1-205ENST00000423214 TRIM41Q8WV44 630 aa29.81■■■□□ 2.36
COL18A1-205ENST00000423214 DNMBPQ6XZF7 1577 aa29.81■■■□□ 2.36
COL18A1-205ENST00000423214 ABCC8Q09428 1581 aa29.8■■■□□ 2.36
COL18A1-205ENST00000423214 OSCARQ8IYS5 282 aa29.75■■■□□ 2.35
COL18A1-205ENST00000423214 ZNF608Q9ULD9 1512 aaPredicted RBP29.75■■■□□ 2.35
COL18A1-205ENST00000423214 EIF4G3O43432 1585 aaKnown RBP29.74■■■□□ 2.35
COL18A1-205ENST00000423214 TARBP1Q13395 1621 aaKnown RBP29.62■■■□□ 2.33
COL18A1-205ENST00000423214 CHD1O14646 1710 aa29.58■■■□□ 2.33
COL18A1-205ENST00000423214 RIMBP3CA6NJZ7 1639 aa29.56■■■□□ 2.32
COL18A1-205ENST00000423214 RIMBP3BA6NNM3 1639 aa29.56■■■□□ 2.32
COL18A1-205ENST00000423214 RIMBP3Q9UFD9 1639 aa29.56■■■□□ 2.32
COL18A1-205ENST00000423214 POLA1P09884 1462 aaPredicted RBP29.54■■■□□ 2.32
COL18A1-205ENST00000423214 AQRO60306 1485 aaKnown RBP eCLIP29.45■■■□□ 2.314e-7■■■■■ 27.8
COL18A1-205ENST00000423214 ARHGEF11O15085 1522 aa29.42■■■□□ 2.3
COL18A1-205ENST00000423214 WDR97A6NE52 1622 aa29.4■■■□□ 2.3
COL18A1-205ENST00000423214 RAD54L2Q9Y4B4 1467 aa29.38■■■□□ 2.29
COL18A1-205ENST00000423214 FGD5Q6ZNL6 1462 aa29.37■■■□□ 2.29
COL18A1-205ENST00000423214 SOGA1O94964 1423 aa29.35■■■□□ 2.29
COL18A1-205ENST00000423214 CUX1P39880 1505 aa29.35■■■□□ 2.29
COL18A1-205ENST00000423214 TDRD9Q8NDG6 1382 aaKnown RBP29.26■■■□□ 2.27
COL18A1-205ENST00000423214 FBLN2P98095 1184 aa29.25■■■□□ 2.27
COL18A1-205ENST00000423214 SNAPC4Q5SXM2 1469 aa29.24■■■□□ 2.27
COL18A1-205ENST00000423214 PBRM1Q86U86 1689 aa29.24■■■□□ 2.27
COL18A1-205ENST00000423214 MAGI1Q96QZ7 1491 aaPredicted RBP29.17■■■□□ 2.26
COL18A1-205ENST00000423214 SUPT5HO00267 1087 aaKnown RBP29.17■■■□□ 2.26
COL18A1-205ENST00000423214 GRIN2BQ13224 1484 aa29.15■■■□□ 2.26
COL18A1-205ENST00000423214 SYNJ1O43426 1573 aa29.14■■■□□ 2.26
COL18A1-205ENST00000423214 ARAP1Q96P48 1450 aa29.1■■■□□ 2.25
COL18A1-205ENST00000423214 CLASP1Q7Z460 1538 aa29.1■■■□□ 2.25
COL18A1-205ENST00000423214 ABCA5Q8WWZ7 1642 aa29.07■■■□□ 2.24
COL18A1-205ENST00000423214 SYNJ2O15056 1496 aa29.06■■■□□ 2.24
COL18A1-205ENST00000423214 CYB5RLQ6IPT4 315 aa29.06■■■□□ 2.24
COL18A1-205ENST00000423214 GAPVD1Q14C86 1478 aa29.04■■■□□ 2.24
COL18A1-205ENST00000423214 CHMP7Q8WUX9 453 aaPredicted RBP29.03■■■□□ 2.24
COL18A1-205ENST00000423214 ABCA10Q8WWZ4 1543 aa29.03■■■□□ 2.24
COL18A1-205ENST00000423214 BIVM-ERCC5R4GMW8 1640 aa29■■■□□ 2.23
COL18A1-205ENST00000423214 TOP2BQ02880 1626 aa28.94■■■□□ 2.22
COL18A1-205ENST00000423214 WRNQ14191 1432 aaPredicted RBP eCLIP28.9■■■□□ 2.22
COL18A1-205ENST00000423214 ADAMTS12P58397 1594 aa28.86■■■□□ 2.21
COL18A1-205ENST00000423214 GRIN2AQ12879 1464 aa28.78■■■□□ 2.2
COL18A1-205ENST00000423214 TRHP20396 242 aaPredicted RBP28.78■■■□□ 2.2
COL18A1-205ENST00000423214 CEP170Q5SW79 1584 aa28.72■■■□□ 2.19
COL18A1-205ENST00000423214 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
COL18A1-205ENST00000423214 FHAD1B1AJZ9 1412 aa28.66■■■□□ 2.18
COL18A1-205ENST00000423214 NUP160Q12769 1436 aa28.64■■■□□ 2.18
COL18A1-205ENST00000423214 SHROOM2Q13796 1616 aa28.62■■■□□ 2.17
COL18A1-205ENST00000423214 ERCC6L2Q5T890 1561 aa28.61■■■□□ 2.17
COL18A1-205ENST00000423214 RUSC2Q8N2Y8 1516 aa28.47■■■□□ 2.15
COL18A1-205ENST00000423214 CUL7Q14999 1698 aa28.4■■■□□ 2.14
COL18A1-205ENST00000423214 PRG4Q92954 1404 aaPredicted RBP28.35■■■□□ 2.13
COL18A1-205ENST00000423214 KIF27Q86VH2 1401 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms