RNA–Protein interactions for RNA: ENST00000450882.1

MRPL28-206, Transcript of mitochondrial ribosomal protein L28, humanhuman

TSL 3

Gene MRPL28, Length 619 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL28-206ENST00000450882 NISCHQ9Y2I1 1504 aa39.07■■■■□ 3.84
MRPL28-206ENST00000450882 CCDC180Q9P1Z9 1646 aa34.66■■■■□ 3.14
MRPL28-206ENST00000450882 ABCC9O60706 1549 aa33.81■■■■□ 3
MRPL28-206ENST00000450882 DCAF8L2P0C7V8 631 aa32.71■■■□□ 2.83
MRPL28-206ENST00000450882 RB1CC1Q8TDY2 1594 aa32.58■■■□□ 2.81
MRPL28-206ENST00000450882 ZCCHC6Q5VYS8 1495 aaKnown RBP32.57■■■□□ 2.8
MRPL28-206ENST00000450882 NACADO15069 1562 aa32.56■■■□□ 2.8
MRPL28-206ENST00000450882 MYO15BQ96JP2 1530 aa32.37■■■□□ 2.77
MRPL28-206ENST00000450882 DCAF1Q9Y4B6 1507 aa32.31■■■□□ 2.76
MRPL28-206ENST00000450882 UNC13AQ9UPW8 1703 aa31.79■■■□□ 2.68
MRPL28-206ENST00000450882 SCRIBQ14160 1630 aa31.69■■■□□ 2.66
MRPL28-206ENST00000450882 PABPN1Q86U42 306 aaKnown RBP eCLIP31.64■■■□□ 2.664e-8■■■■■ 30
MRPL28-206ENST00000450882 BICRAQ9NZM4 1560 aa31.52■■■□□ 2.64
MRPL28-206ENST00000450882 SHROOM4Q9ULL8 1493 aa31.24■■■□□ 2.59
MRPL28-206ENST00000450882 DNAJC5BQ9UF47 199 aa30.81■■■□□ 2.52
MRPL28-206ENST00000450882 EIF4G1Q04637 1599 aaKnown RBP30.72■■■□□ 2.51
MRPL28-206ENST00000450882 CC2D2AQ9P2K1 1620 aa30.55■■■□□ 2.48
MRPL28-206ENST00000450882 CECR2Q9BXF3 1484 aa30.42■■■□□ 2.46
MRPL28-206ENST00000450882 BAZ1AQ9NRL2 1556 aaPredicted RBP30.3■■■□□ 2.44
MRPL28-206ENST00000450882 SMARCA4P51532 1647 aa30.29■■■□□ 2.44
MRPL28-206ENST00000450882 MROH2BQ7Z745 1585 aa30.11■■■□□ 2.41
MRPL28-206ENST00000450882 SMARCA2P51531 1590 aa30.08■■■□□ 2.41
MRPL28-206ENST00000450882 ATAD2BQ9ULI0 1458 aa30.08■■■□□ 2.41
MRPL28-206ENST00000450882 NCAPD3P42695 1498 aa30.02■■■□□ 2.4
MRPL28-206ENST00000450882 PEG3Q9GZU2 1588 aa29.95■■■□□ 2.39
MRPL28-206ENST00000450882 HMGXB3Q12766 1538 aa29.91■■■□□ 2.38
MRPL28-206ENST00000450882 BAZ1BQ9UIG0 1483 aaKnown RBP29.89■■■□□ 2.38
MRPL28-206ENST00000450882 RSF1Q96T23 1441 aaPredicted RBP29.83■■■□□ 2.37
MRPL28-206ENST00000450882 WIZO95785 1651 aa29.81■■■□□ 2.36
MRPL28-206ENST00000450882 TOP2AP11388 1531 aaKnown RBP29.51■■■□□ 2.32
MRPL28-206ENST00000450882 SUPT5HO00267 1087 aaKnown RBP29.31■■■□□ 2.28
MRPL28-206ENST00000450882 NESP48681 1621 aa29.28■■■□□ 2.28
MRPL28-206ENST00000450882 LAMC3Q9Y6N6 1575 aa29.23■■■□□ 2.27
MRPL28-206ENST00000450882 CADPSQ9ULU8 1353 aa29.19■■■□□ 2.26
MRPL28-206ENST00000450882 ERCC6Q03468 1493 aa29.18■■■□□ 2.26
MRPL28-206ENST00000450882 CCDC88BA6NC98 1476 aa29.16■■■□□ 2.26
MRPL28-206ENST00000450882 PDS5BQ9NTI5 1447 aa29.06■■■□□ 2.24
MRPL28-206ENST00000450882 CFTRP13569 1480 aa29.03■■■□□ 2.24
MRPL28-206ENST00000450882 KIF21AQ7Z4S6 1674 aa28.94■■■□□ 2.22
MRPL28-206ENST00000450882 FANCD2Q9BXW9 1451 aa28.87■■■□□ 2.21
MRPL28-206ENST00000450882 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
MRPL28-206ENST00000450882 PRDM2Q13029 1718 aa28.83■■■□□ 2.21
MRPL28-206ENST00000450882 THOC2Q8NI27 1593 aaKnown RBP28.78■■■□□ 2.2
MRPL28-206ENST00000450882 CUX2O14529 1486 aa28.74■■■□□ 2.19
MRPL28-206ENST00000450882 MRC2Q9UBG0 1479 aa28.74■■■□□ 2.19
MRPL28-206ENST00000450882 WDR62O43379 1518 aa28.61■■■□□ 2.17
MRPL28-206ENST00000450882 URB2Q14146 1524 aaKnown RBP28.54■■■□□ 2.16
MRPL28-206ENST00000450882 ABCC8Q09428 1581 aa28.43■■■□□ 2.14
MRPL28-206ENST00000450882 TOPBP1Q92547 1522 aa28.41■■■□□ 2.14
MRPL28-206ENST00000450882 DNMBPQ6XZF7 1577 aa28.41■■■□□ 2.14
MRPL28-206ENST00000450882 CUX1P39880 1505 aa28.24■■■□□ 2.11
MRPL28-206ENST00000450882 IFT140Q96RY7 1462 aa28.21■■■□□ 2.11
MRPL28-206ENST00000450882 POLA1P09884 1462 aaPredicted RBP28.18■■■□□ 2.1
MRPL28-206ENST00000450882 WRNQ14191 1432 aaPredicted RBP eCLIP28.17■■■□□ 2.1
MRPL28-206ENST00000450882 FGD5Q6ZNL6 1462 aa28.15■■■□□ 2.1
MRPL28-206ENST00000450882 SOGA1O94964 1423 aa28.09■■■□□ 2.09
MRPL28-206ENST00000450882 RAD54L2Q9Y4B4 1467 aa28.07■■■□□ 2.08
MRPL28-206ENST00000450882 TARBP1Q13395 1621 aaKnown RBP28.07■■■□□ 2.08
MRPL28-206ENST00000450882 SYNJ1O43426 1573 aa28.06■■■□□ 2.08
MRPL28-206ENST00000450882 TOP2BQ02880 1626 aa28.06■■■□□ 2.08
MRPL28-206ENST00000450882 BIVM-ERCC5R4GMW8 1640 aa28.04■■■□□ 2.08
MRPL28-206ENST00000450882 ZNF608Q9ULD9 1512 aaPredicted RBP28.04■■■□□ 2.08
MRPL28-206ENST00000450882 EIF4G3O43432 1585 aaKnown RBP27.96■■■□□ 2.07
MRPL28-206ENST00000450882 AQRO60306 1485 aaKnown RBP eCLIP27.93■■■□□ 2.061e-7■■■■■ 28.7
MRPL28-206ENST00000450882 TDRD9Q8NDG6 1382 aaKnown RBP27.92■■■□□ 2.06
MRPL28-206ENST00000450882 ABCA10Q8WWZ4 1543 aa27.87■■■□□ 2.05
MRPL28-206ENST00000450882 WDR97A6NE52 1622 aa27.86■■■□□ 2.05
MRPL28-206ENST00000450882 GAPVD1Q14C86 1478 aa27.77■■■□□ 2.04
MRPL28-206ENST00000450882 GRIN2BQ13224 1484 aa27.75■■■□□ 2.03
MRPL28-206ENST00000450882 ABCA5Q8WWZ7 1642 aa27.73■■■□□ 2.03
MRPL28-206ENST00000450882 SNAPC4Q5SXM2 1469 aa27.69■■■□□ 2.02
MRPL28-206ENST00000450882 PBRM1Q86U86 1689 aa27.68■■■□□ 2.02
MRPL28-206ENST00000450882 TRIM41Q8WV44 630 aa27.66■■■□□ 2.02
MRPL28-206ENST00000450882 FBLN2P98095 1184 aa27.65■■■□□ 2.02
MRPL28-206ENST00000450882 DNAJC5Q9H3Z4 198 aa27.65■■■□□ 2.02
MRPL28-206ENST00000450882 MAGI1Q96QZ7 1491 aaPredicted RBP27.64■■■□□ 2.02
MRPL28-206ENST00000450882 OSCARQ8IYS5 282 aa27.61■■■□□ 2.01
MRPL28-206ENST00000450882 KIF27Q86VH2 1401 aa27.58■■■□□ 2
MRPL28-206ENST00000450882 CHMP7Q8WUX9 453 aaPredicted RBP27.57■■■□□ 2
MRPL28-206ENST00000450882 CHD1O14646 1710 aa27.57■■■□□ 2
MRPL28-206ENST00000450882 ERICH3Q5RHP9 1530 aa27.54■■■□□ 2
MRPL28-206ENST00000450882 SYNJ2O15056 1496 aa27.53■■■□□ 2
MRPL28-206ENST00000450882 ADAMTS12P58397 1594 aa27.48■■□□□ 1.99
MRPL28-206ENST00000450882 FHAD1B1AJZ9 1412 aa27.45■■□□□ 1.98
MRPL28-206ENST00000450882 IGF1RP08069 1367 aa27.39■■□□□ 1.98
MRPL28-206ENST00000450882 CHIC1Q5VXU3 224 aa27.38■■□□□ 1.97
MRPL28-206ENST00000450882 GRIN2AQ12879 1464 aa27.38■■□□□ 1.97
MRPL28-206ENST00000450882 CUL7Q14999 1698 aa27.34■■□□□ 1.97
MRPL28-206ENST00000450882 RUSC2Q8N2Y8 1516 aa27.32■■□□□ 1.96
MRPL28-206ENST00000450882 CARMIL1Q5VZK9 1371 aa27.27■■□□□ 1.96
MRPL28-206ENST00000450882 CLASP1Q7Z460 1538 aa27.25■■□□□ 1.95
MRPL28-206ENST00000450882 NUP160Q12769 1436 aa27.22■■□□□ 1.95
MRPL28-206ENST00000450882 CEP170Q5SW79 1584 aa27.22■■□□□ 1.95
MRPL28-206ENST00000450882 EEA1Q15075 1411 aa27.16■■□□□ 1.94
MRPL28-206ENST00000450882 ARHGEF11O15085 1522 aa27.14■■□□□ 1.94
MRPL28-206ENST00000450882 RAPGEF2Q9Y4G8 1499 aa27.13■■□□□ 1.93
MRPL28-206ENST00000450882 RIMBP3CA6NJZ7 1639 aa27.12■■□□□ 1.93
MRPL28-206ENST00000450882 RIMBP3BA6NNM3 1639 aa27.12■■□□□ 1.93
MRPL28-206ENST00000450882 RIMBP3Q9UFD9 1639 aa27.12■■□□□ 1.93
MRPL28-206ENST00000450882 FAM9AQ8IZU1 332 aaPredicted RBP27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms