RNA–Protein interactions for RNA: ENST00000619259.4

SEM1-220, Transcript of SEM1, 26S proteasome complex subunit, humanhuman

TSL 2

Gene SEM1, Length 462 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEM1-220ENST00000619259 AEBP2Q6ZN18 517 aaPredicted RBP19.12■□□□□ 0.65
SEM1-220ENST00000619259 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
SEM1-220ENST00000619259 PHF23Q9BUL5 403 aaPredicted RBP16.68■□□□□ 0.26
SEM1-220ENST00000619259 SENP3Q9H4L4 574 aaPredicted RBP16.21■□□□□ 0.19
SEM1-220ENST00000619259 PLPPR3Q6T4P5 718 aa15.54■□□□□ 0.08
SEM1-220ENST00000619259 FOXD1Q16676 465 aa15.01□□□□□ -0.01
SEM1-220ENST00000619259 ADRA2BP18089 450 aa14.7□□□□□ -0.06
SEM1-220ENST00000619259 PPP6R1Q9UPN7 881 aa14.66□□□□□ -0.06
SEM1-220ENST00000619259 PIAS4Q8N2W9 510 aaPredicted RBP14.28□□□□□ -0.12
SEM1-220ENST00000619259 MSH5O43196 834 aa13.75□□□□□ -0.21
SEM1-220ENST00000619259 PPP4R3CPQ6ZMV5 832 aa13.73□□□□□ -0.21
SEM1-220ENST00000619259 KCNA4P22459 653 aa13.72□□□□□ -0.21
SEM1-220ENST00000619259 NCBP3Q53F19 620 aaKnown RBP13.48□□□□□ -0.25
SEM1-220ENST00000619259 SCAF1Q9H7N4 1312 aaKnown RBP13.45□□□□□ -0.26
SEM1-220ENST00000619259 CNKSR2Q8WXI2 1034 aa13.28□□□□□ -0.28
SEM1-220ENST00000619259 MAPK8IP2Q13387 824 aaPredicted RBP13.26□□□□□ -0.29
SEM1-220ENST00000619259 NPM3O75607 178 aaKnown RBP13.24□□□□□ -0.29
SEM1-220ENST00000619259 SLC4A1APQ9BWU0 796 aaKnown RBP13.14□□□□□ -0.31
SEM1-220ENST00000619259 EHMT2Q96KQ7 1210 aa13.13□□□□□ -0.31
SEM1-220ENST00000619259 DMRT2Q9Y5R5 561 aa12.96□□□□□ -0.33
SEM1-220ENST00000619259 RNF216Q9NWF9 866 aaPredicted RBP12.93□□□□□ -0.34
SEM1-220ENST00000619259 HOXD11P31277 338 aaPredicted RBP12.77□□□□□ -0.37
SEM1-220ENST00000619259 CSRNP3Q8WYN3 585 aa12.76□□□□□ -0.37
SEM1-220ENST00000619259 DNAJC5BQ9UF47 199 aa12.67□□□□□ -0.38
SEM1-220ENST00000619259 ZBTB22O15209 634 aa12.59□□□□□ -0.39
SEM1-220ENST00000619259 DCAF8L1A6NGE4 600 aa12.55□□□□□ -0.4
SEM1-220ENST00000619259 FOXD4L1Q9NU39 408 aa12.54□□□□□ -0.4
SEM1-220ENST00000619259 SLC4A2P04920 1241 aa12.4□□□□□ -0.42
SEM1-220ENST00000619259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.446e-10■■□□□ 13.6
SEM1-220ENST00000619259 MYCNP04198 464 aaPredicted RBP12.24□□□□□ -0.45
SEM1-220ENST00000619259 POTEDQ86YR6 584 aa12.05□□□□□ -0.48
SEM1-220ENST00000619259 U3KPZ7 1027 aaPredicted RBP12.05□□□□□ -0.48
SEM1-220ENST00000619259 ATXN8OSP0DMR3 200 aa12.04□□□□□ -0.48
SEM1-220ENST00000619259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.02□□□□□ -0.49
SEM1-220ENST00000619259 HNRNPUL2Q1KMD3 747 aaKnown RBP12.02□□□□□ -0.49
SEM1-220ENST00000619259 SAMD1Q6SPF0 538 aaPredicted RBP11.98□□□□□ -0.49
SEM1-220ENST00000619259 ATF5Q9Y2D1 282 aaPredicted RBP11.89□□□□□ -0.51
SEM1-220ENST00000619259 APLP2Q06481 763 aa11.85□□□□□ -0.51
SEM1-220ENST00000619259 RNF39Q9H2S5 420 aa11.77□□□□□ -0.53
SEM1-220ENST00000619259 TRHP20396 242 aaPredicted RBP11.69□□□□□ -0.54
SEM1-220ENST00000619259 ZNF219Q9P2Y4 722 aaPredicted RBP11.69□□□□□ -0.54
SEM1-220ENST00000619259 CAPN15O75808 1086 aa11.67□□□□□ -0.54
SEM1-220ENST00000619259 C1QBPQ07021 282 aaKnown RBP11.67□□□□□ -0.54
SEM1-220ENST00000619259 SPINK5Q9NQ38 1064 aaPredicted RBP11.67□□□□□ -0.54
SEM1-220ENST00000619259 FKBP8Q14318 412 aa11.59□□□□□ -0.55
SEM1-220ENST00000619259 POLA2Q14181 598 aa11.51□□□□□ -0.57
SEM1-220ENST00000619259 ABCB7O75027 752 aa11.47□□□□□ -0.57
SEM1-220ENST00000619259 FBLN2P98095 1184 aa11.43□□□□□ -0.58
SEM1-220ENST00000619259 CACNB1Q02641 598 aaPredicted RBP11.37□□□□□ -0.59
SEM1-220ENST00000619259 MKRN4PQ13434 485 aaPredicted RBP11.36□□□□□ -0.59
SEM1-220ENST00000619259 DSG3P32926 999 aa11.32□□□□□ -0.6
SEM1-220ENST00000619259 ZBTB12Q9Y330 459 aaPredicted RBP11.31□□□□□ -0.6
SEM1-220ENST00000619259 SPDYE4A6NLX3 237 aa11.29□□□□□ -0.6
SEM1-220ENST00000619259 OSCARQ8IYS5 282 aa11.1□□□□□ -0.63
SEM1-220ENST00000619259 ZNF692Q9BU19 519 aaPredicted RBP11.08□□□□□ -0.64
SEM1-220ENST00000619259 FBXO3Q9UK99 471 aa11.08□□□□□ -0.64
SEM1-220ENST00000619259 SPDYE2BA6NHP3 402 aa11.02□□□□□ -0.65
SEM1-220ENST00000619259 SPDYE6P0CI01 402 aa11.02□□□□□ -0.65
SEM1-220ENST00000619259 SPDYE2Q495Y8 402 aa11.02□□□□□ -0.65
SEM1-220ENST00000619259 PROM2Q8N271 834 aa11.02□□□□□ -0.65
SEM1-220ENST00000619259 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
SEM1-220ENST00000619259 RTN4Q9NQC3 1192 aaKnown RBP10.97□□□□□ -0.65
SEM1-220ENST00000619259 PABPN1Q86U42 306 aaKnown RBP eCLIP10.92□□□□□ -0.66
SEM1-220ENST00000619259 SSUH2Q9Y2M2 353 aa10.91□□□□□ -0.66
SEM1-220ENST00000619259 VASPP50552 380 aaPredicted RBP10.9□□□□□ -0.66
SEM1-220ENST00000619259 RBM42Q9BTD8 480 aaKnown RBP10.81□□□□□ -0.68
SEM1-220ENST00000619259 STAG3Q9UJ98 1225 aa10.81□□□□□ -0.68
SEM1-220ENST00000619259 IFNLR1Q8IU57 520 aaPredicted RBP10.76□□□□□ -0.69
SEM1-220ENST00000619259 KLHL34Q8N239 644 aa10.76□□□□□ -0.69
SEM1-220ENST00000619259 PLCD3Q8N3E9 789 aa10.75□□□□□ -0.69
SEM1-220ENST00000619259 MIER1Q8N108 512 aa10.74□□□□□ -0.69
SEM1-220ENST00000619259 AKT1S1Q96B36 256 aa10.71□□□□□ -0.69
SEM1-220ENST00000619259 PLEKHG5O94827 1062 aa10.67□□□□□ -0.7
SEM1-220ENST00000619259 CLEC11AQ9Y240 323 aa10.67□□□□□ -0.7
SEM1-220ENST00000619259 SPDYE1Q8NFV5 336 aaPredicted RBP10.66□□□□□ -0.7
SEM1-220ENST00000619259 REM2Q8IYK8 340 aaPredicted RBP10.62□□□□□ -0.71
SEM1-220ENST00000619259 SPOCK2Q92563 424 aa10.62□□□□□ -0.71
SEM1-220ENST00000619259 PRR29P0C7W0 189 aa10.58□□□□□ -0.72
SEM1-220ENST00000619259 ZBTB47Q9UFB7 747 aaPredicted RBP10.57□□□□□ -0.72
SEM1-220ENST00000619259 DCAF8L2P0C7V8 631 aa10.53□□□□□ -0.72
SEM1-220ENST00000619259 PITPNM1O00562 1244 aa10.49□□□□□ -0.73
SEM1-220ENST00000619259 PKD2Q13563 968 aa10.49□□□□□ -0.73
SEM1-220ENST00000619259 CIZ1Q9ULV3 898 aaPredicted RBP10.48□□□□□ -0.73
SEM1-220ENST00000619259 ECM2O94769 699 aaPredicted RBP10.46□□□□□ -0.73
SEM1-220ENST00000619259 CREBZFQ9NS37 354 aa10.44□□□□□ -0.74
SEM1-220ENST00000619259 SLC24A1O60721 1099 aa10.37□□□□□ -0.75
SEM1-220ENST00000619259 DCAF8Q5TAQ9 597 aa10.37□□□□□ -0.75
SEM1-220ENST00000619259 CHADLQ6NUI6 762 aa10.35□□□□□ -0.75
SEM1-220ENST00000619259 GSE1Q14687 1217 aa10.34□□□□□ -0.75
SEM1-220ENST00000619259 NPM1P06748 294 aaKnown RBP eCLIP10.33□□□□□ -0.76
SEM1-220ENST00000619259 NUBP1P53384 320 aa10.33□□□□□ -0.76
SEM1-220ENST00000619259 MNX1P50219 401 aaPredicted RBP10.32□□□□□ -0.76
SEM1-220ENST00000619259 FAM212AQ96EL1 285 aa10.31□□□□□ -0.76
SEM1-220ENST00000619259 RGL2O15211 777 aa10.3□□□□□ -0.76
SEM1-220ENST00000619259 TRIM41Q8WV44 630 aa10.28□□□□□ -0.76
SEM1-220ENST00000619259 PRKAR2AP13861 404 aaKnown RBP10.27□□□□□ -0.77
SEM1-220ENST00000619259 RASEFQ8IZ41 740 aa10.26□□□□□ -0.77
SEM1-220ENST00000619259 CHRDL2Q6WN34 429 aa10.25□□□□□ -0.77
SEM1-220ENST00000619259 FARP1Q9Y4F1 1045 aaPredicted RBP10.23□□□□□ -0.77
SEM1-220ENST00000619259 FXR2P51116 673 aaKnown RBP eCLIP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms