RNA–Protein interactions for RNA: ENST00000288723.8

RAB28-201, Transcript of RAB28, member RAS oncogene family, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RAB28, Length 1,810 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-201ENST00000288723 NISCHQ9Y2I1 1504 aa49.99■■■■■ 5.59
RAB28-201ENST00000288723 CCDC180Q9P1Z9 1646 aa44.42■■■■■ 4.7
RAB28-201ENST00000288723 ABCC9O60706 1549 aa43.84■■■■■ 4.61
RAB28-201ENST00000288723 DCAF8L2P0C7V8 631 aa42.04■■■■■ 4.32
RAB28-201ENST00000288723 RB1CC1Q8TDY2 1594 aa41.96■■■■■ 4.31
RAB28-201ENST00000288723 NACADO15069 1562 aa41.85■■■■■ 4.29
RAB28-201ENST00000288723 ZCCHC6Q5VYS8 1495 aaKnown RBP41.58■■■■■ 4.25
RAB28-201ENST00000288723 MYO15BQ96JP2 1530 aa41.48■■■■■ 4.23
RAB28-201ENST00000288723 DCAF1Q9Y4B6 1507 aa41.26■■■■■ 4.2
RAB28-201ENST00000288723 UNC13AQ9UPW8 1703 aa41.03■■■■■ 4.16
RAB28-201ENST00000288723 PABPN1Q86U42 306 aaKnown RBP eCLIP41.01■■■■■ 4.16
RAB28-201ENST00000288723 BICRAQ9NZM4 1560 aa40.75■■■■■ 4.11
RAB28-201ENST00000288723 SCRIBQ14160 1630 aa40.66■■■■■ 4.1
RAB28-201ENST00000288723 DNAJC5BQ9UF47 199 aa40.49■■■■■ 4.07
RAB28-201ENST00000288723 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
RAB28-201ENST00000288723 EIF4G1Q04637 1599 aaKnown RBP39.68■■■■□ 3.94
RAB28-201ENST00000288723 CC2D2AQ9P2K1 1620 aa39.58■■■■□ 3.93
RAB28-201ENST00000288723 CECR2Q9BXF3 1484 aa39.37■■■■□ 3.89
RAB28-201ENST00000288723 SMARCA4P51532 1647 aa38.81■■■■□ 3.8
RAB28-201ENST00000288723 BAZ1AQ9NRL2 1556 aaPredicted RBP38.73■■■■□ 3.79
RAB28-201ENST00000288723 ATAD2BQ9ULI0 1458 aa38.69■■■■□ 3.78
RAB28-201ENST00000288723 NCAPD3P42695 1498 aa38.66■■■■□ 3.78
RAB28-201ENST00000288723 MROH2BQ7Z745 1585 aa38.58■■■■□ 3.77
RAB28-201ENST00000288723 SMARCA2P51531 1590 aa38.57■■■■□ 3.76
RAB28-201ENST00000288723 HMGXB3Q12766 1538 aa38.4■■■■□ 3.74
RAB28-201ENST00000288723 PEG3Q9GZU2 1588 aa38.38■■■■□ 3.74
RAB28-201ENST00000288723 BAZ1BQ9UIG0 1483 aaKnown RBP38.35■■■■□ 3.73
RAB28-201ENST00000288723 WIZO95785 1651 aa38.15■■■■□ 3.7
RAB28-201ENST00000288723 RSF1Q96T23 1441 aaPredicted RBP38.06■■■■□ 3.68
RAB28-201ENST00000288723 NESP48681 1621 aa37.89■■■■□ 3.66
RAB28-201ENST00000288723 ERCC6Q03468 1493 aa37.76■■■■□ 3.64
RAB28-201ENST00000288723 TOP2AP11388 1531 aaKnown RBP37.66■■■■□ 3.62
RAB28-201ENST00000288723 LAMC3Q9Y6N6 1575 aa37.64■■■■□ 3.62
RAB28-201ENST00000288723 CADPSQ9ULU8 1353 aa37.56■■■■□ 3.6
RAB28-201ENST00000288723 PDS5BQ9NTI5 1447 aa37.43■■■■□ 3.58
RAB28-201ENST00000288723 KIF21AQ7Z4S6 1674 aa37.36■■■■□ 3.57
RAB28-201ENST00000288723 CUX2O14529 1486 aa37.35■■■■□ 3.57
RAB28-201ENST00000288723 CCDC88BA6NC98 1476 aa37.29■■■■□ 3.56
RAB28-201ENST00000288723 CFTRP13569 1480 aa37.27■■■■□ 3.56
RAB28-201ENST00000288723 THOC2Q8NI27 1593 aaKnown RBP37.25■■■■□ 3.55
RAB28-201ENST00000288723 FANCD2Q9BXW9 1451 aa37.13■■■■□ 3.54
RAB28-201ENST00000288723 SUPT5HO00267 1087 aaKnown RBP37.09■■■■□ 3.53
RAB28-201ENST00000288723 CEP164Q9UPV0 1460 aa37.08■■■■□ 3.53
RAB28-201ENST00000288723 MRC2Q9UBG0 1479 aa37.06■■■■□ 3.52
RAB28-201ENST00000288723 WDR62O43379 1518 aa36.92■■■■□ 3.5
RAB28-201ENST00000288723 PRDM2Q13029 1718 aa36.87■■■■□ 3.49
RAB28-201ENST00000288723 URB2Q14146 1524 aaKnown RBP36.79■■■■□ 3.48
RAB28-201ENST00000288723 DNAJC5Q9H3Z4 198 aa36.53■■■■□ 3.44
RAB28-201ENST00000288723 TOPBP1Q92547 1522 aa36.51■■■■□ 3.44
RAB28-201ENST00000288723 ABCC8Q09428 1581 aa36.42■■■■□ 3.42
RAB28-201ENST00000288723 DNMBPQ6XZF7 1577 aa36.41■■■■□ 3.42
RAB28-201ENST00000288723 IFT140Q96RY7 1462 aa36.3■■■■□ 3.4
RAB28-201ENST00000288723 ZNF608Q9ULD9 1512 aaPredicted RBP36.24■■■■□ 3.39
RAB28-201ENST00000288723 POLA1P09884 1462 aaPredicted RBP36.2■■■■□ 3.39
RAB28-201ENST00000288723 CUX1P39880 1505 aa36.19■■■■□ 3.38
RAB28-201ENST00000288723 RAD54L2Q9Y4B4 1467 aa36.11■■■■□ 3.37
RAB28-201ENST00000288723 TARBP1Q13395 1621 aaKnown RBP36.11■■■■□ 3.37
RAB28-201ENST00000288723 FGD5Q6ZNL6 1462 aa36.09■■■■□ 3.37
RAB28-201ENST00000288723 SOGA1O94964 1423 aa36.07■■■■□ 3.36
RAB28-201ENST00000288723 AQRO60306 1485 aaKnown RBP eCLIP36.02■■■■□ 3.36
RAB28-201ENST00000288723 EIF4G3O43432 1585 aaKnown RBP36.01■■■■□ 3.36
RAB28-201ENST00000288723 TDRD9Q8NDG6 1382 aaKnown RBP35.94■■■■□ 3.34
RAB28-201ENST00000288723 WRNQ14191 1432 aaPredicted RBP eCLIP35.88■■■■□ 3.33
RAB28-201ENST00000288723 OSCARQ8IYS5 282 aa35.87■■■■□ 3.33
RAB28-201ENST00000288723 SYNJ1O43426 1573 aa35.81■■■■□ 3.32
RAB28-201ENST00000288723 TOP2BQ02880 1626 aa35.77■■■■□ 3.32
RAB28-201ENST00000288723 BIVM-ERCC5R4GMW8 1640 aa35.75■■■■□ 3.31
RAB28-201ENST00000288723 WDR97A6NE52 1622 aa35.72■■■■□ 3.31
RAB28-201ENST00000288723 ABCA10Q8WWZ4 1543 aa35.69■■■■□ 3.3
RAB28-201ENST00000288723 FBLN2P98095 1184 aa35.69■■■■□ 3.3
RAB28-201ENST00000288723 SNAPC4Q5SXM2 1469 aa35.64■■■■□ 3.3
RAB28-201ENST00000288723 GRIN2BQ13224 1484 aa35.62■■■■□ 3.29
RAB28-201ENST00000288723 GAPVD1Q14C86 1478 aa35.62■■■■□ 3.29
RAB28-201ENST00000288723 CHD1O14646 1710 aa35.59■■■■□ 3.29
RAB28-201ENST00000288723 ABCA5Q8WWZ7 1642 aa35.55■■■■□ 3.28
RAB28-201ENST00000288723 MAGI1Q96QZ7 1491 aaPredicted RBP35.52■■■■□ 3.28
RAB28-201ENST00000288723 PBRM1Q86U86 1689 aa35.51■■■■□ 3.27
RAB28-201ENST00000288723 CHMP7Q8WUX9 453 aaPredicted RBP35.5■■■■□ 3.27
RAB28-201ENST00000288723 SYNJ2O15056 1496 aa35.41■■■■□ 3.26
RAB28-201ENST00000288723 TRIM41Q8WV44 630 aa35.35■■■■□ 3.25
RAB28-201ENST00000288723 RIMBP3CA6NJZ7 1639 aa35.27■■■■□ 3.24
RAB28-201ENST00000288723 RIMBP3BA6NNM3 1639 aa35.27■■■■□ 3.24
RAB28-201ENST00000288723 RIMBP3Q9UFD9 1639 aa35.27■■■■□ 3.24
RAB28-201ENST00000288723 ARHGEF11O15085 1522 aa35.26■■■■□ 3.23
RAB28-201ENST00000288723 ERICH3Q5RHP9 1530 aa35.23■■■■□ 3.23
RAB28-201ENST00000288723 ADAMTS12P58397 1594 aa35.23■■■■□ 3.23
RAB28-201ENST00000288723 CLASP1Q7Z460 1538 aa35.19■■■■□ 3.22
RAB28-201ENST00000288723 FHAD1B1AJZ9 1412 aa35.19■■■■□ 3.22
RAB28-201ENST00000288723 GRIN2AQ12879 1464 aa35.18■■■■□ 3.22
RAB28-201ENST00000288723 KIF27Q86VH2 1401 aa35.12■■■■□ 3.21
RAB28-201ENST00000288723 IGF1RP08069 1367 aa35.05■■■■□ 3.2
RAB28-201ENST00000288723 CYB5RLQ6IPT4 315 aa35.04■■■■□ 3.2
RAB28-201ENST00000288723 CEP170Q5SW79 1584 aa35.02■■■■□ 3.2
RAB28-201ENST00000288723 NUP160Q12769 1436 aa35.01■■■■□ 3.2
RAB28-201ENST00000288723 ARAP1Q96P48 1450 aa34.97■■■■□ 3.19
RAB28-201ENST00000288723 RUSC2Q8N2Y8 1516 aa34.86■■■■□ 3.17
RAB28-201ENST00000288723 CUL7Q14999 1698 aa34.85■■■■□ 3.17
RAB28-201ENST00000288723 CARMIL1Q5VZK9 1371 aa34.83■■■■□ 3.17
RAB28-201ENST00000288723 ERCC6L2Q5T890 1561 aa34.79■■■■□ 3.16
RAB28-201ENST00000288723 SHROOM2Q13796 1616 aa34.74■■■■□ 3.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms