Protein–RNA interactions for Protein: Q7KZF4

SND1, Staphylococcal nuclease domain-containing protein 1, humanhuman

Known RBP eCLIP

Length 910 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SND1Q7KZF4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.79■□□□□ 0.762e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.682e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.41■□□□□ 0.542e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.29■□□□□ 0.522e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-220ENST00000498431 667 ntTSL 1 (best)16.62■□□□□ 0.252e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.222e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.12e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.082e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC15.43■□□□□ 0.062e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-214ENST00000462317 1112 ntAPPRIS ALT2 TSL 315.35■□□□□ 0.052e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.18■□□□□ 0.022e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.14■□□□□ 0.012e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.34□□□□□ -0.112e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-222ENST00000610468 1162 ntTSL 1 (best)14.34□□□□□ -0.112e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.122e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC13.51□□□□□ -0.252e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC13.51□□□□□ -0.252e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC13.51□□□□□ -0.252e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-216ENST00000467134 619 ntTSL 1 (best)11.46□□□□□ -0.572e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-205ENST00000368389 543 ntTSL 1 (best) BASIC8.4□□□□□ -1.062e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC8.4□□□□□ -1.062e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-209ENST00000368396 516 ntTSL 1 (best) BASIC8.4□□□□□ -1.062e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC8.4□□□□□ -1.062e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC7.16□□□□□ -1.262e-6■□□□□ 8.2
SND1Q7KZF4 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC7.16□□□□□ -1.262e-6■□□□□ 8.2
SND1Q7KZF4 IDH1-206ENST00000451391 563 ntTSL 319.71■□□□□ 0.754e-7■□□□□ 8.2
SND1Q7KZF4 IDH1-204ENST00000417583 702 ntTSL 414.8□□□□□ -0.044e-7■□□□□ 8.2
SND1Q7KZF4 IDH1-208ENST00000481557 556 ntTSL 212.51□□□□□ -0.414e-7■□□□□ 8.2
SND1Q7KZF4 SNRPD3-204ENST00000439775 640 ntTSL 316.75■□□□□ 0.271e-9■□□□□ 8.2
SND1Q7KZF4 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.251e-9■□□□□ 8.2
SND1Q7KZF4 MED24-214ENST00000535508 3334 ntTSL 214.33□□□□□ -0.111e-9■□□□□ 8.2
SND1Q7KZF4 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.121e-9■□□□□ 8.2
SND1Q7KZF4 MED24-201ENST00000356271 3446 ntTSL 2 BASIC13.57□□□□□ -0.241e-9■□□□□ 8.2
SND1Q7KZF4 MED24-209ENST00000491466 957 ntTSL 513.29□□□□□ -0.281e-9■□□□□ 8.2
SND1Q7KZF4 MED24-203ENST00000394127 3456 ntTSL 2 BASIC13.27□□□□□ -0.281e-9■□□□□ 8.2
SND1Q7KZF4 MED24-202ENST00000394126 3896 ntTSL 1 (best) BASIC12□□□□□ -0.491e-9■□□□□ 8.2
SND1Q7KZF4 GART-213ENST00000467575 922 ntTSL 39.95□□□□□ -0.821e-9■□□□□ 8.2
SND1Q7KZF4 SNRPD3-203ENST00000404603 715 ntTSL 58.79□□□□□ -11e-9■□□□□ 8.2
SND1Q7KZF4 MED24-234ENST00000614384 454 ntTSL 1 (best) BASIC8.44□□□□□ -1.061e-9■□□□□ 8.2
SND1Q7KZF4 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC7.66□□□□□ -1.181e-9■□□□□ 8.2
SND1Q7KZF4 CCT2-211ENST00000550653 567 ntTSL 25.4□□□□□ -1.541e-9■□□□□ 8.2
SND1Q7KZF4 CTSA-206ENST00000480961 513 ntTSL 221.11■□□□□ 0.977e-11■□□□□ 8.2
SND1Q7KZF4 SLC12A4-212ENST00000573023 3649 ntTSL 520.85■□□□□ 0.932e-6■□□□□ 8.2
SND1Q7KZF4 ECE1-209ENST00000481130 578 ntTSL 416.95■□□□□ 0.32e-6■□□□□ 8.2
SND1Q7KZF4 GTF3C1-203ENST00000562609 2824 ntTSL 515.67■□□□□ 0.12e-6■□□□□ 8.2
SND1Q7KZF4 SLC12A4-210ENST00000572476 573 ntTSL 515.31■□□□□ 0.042e-6■□□□□ 8.2
SND1Q7KZF4 SLC12A4-218ENST00000576513 412 ntTSL 513.96□□□□□ -0.172e-6■□□□□ 8.2
SND1Q7KZF4 SLC12A4-214ENST00000574665 847 ntTSL 512.42□□□□□ -0.422e-6■□□□□ 8.2
SND1Q7KZF4 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC25.94■■□□□ 1.746e-11■□□□□ 8.2
SND1Q7KZF4 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.98■■□□□ 1.116e-11■□□□□ 8.2
SND1Q7KZF4 SAE1-207ENST00000596995 2106 ntTSL 220.48■□□□□ 0.876e-11■□□□□ 8.2
SND1Q7KZF4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.836e-11■□□□□ 8.2
SND1Q7KZF4 SAE1-204ENST00000414294 2211 ntTSL 219.84■□□□□ 0.776e-11■□□□□ 8.2
SND1Q7KZF4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.13■□□□□ 0.336e-11■□□□□ 8.2
SND1Q7KZF4 LAMB2-216ENST00000494831 582 ntTSL 212.41□□□□□ -0.422e-8■□□□□ 8.2
SND1Q7KZF4 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.241e-6■□□□□ 8.2
SND1Q7KZF4 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.41e-6■□□□□ 8.2
SND1Q7KZF4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.681e-6■□□□□ 8.2
SND1Q7KZF4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.48■■□□□ 1.034e-12■□□□□ 8.2
SND1Q7KZF4 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.54■□□□□ 0.884e-12■□□□□ 8.2
SND1Q7KZF4 KRT19-203ENST00000462611 504 ntTSL 216.81■□□□□ 0.284e-12■□□□□ 8.2
SND1Q7KZF4 KRT19-206ENST00000479031 427 ntTSL 215.06■□□□□ 04e-12■□□□□ 8.2
SND1Q7KZF4 CCT5-203ENST00000503026 1933 ntTSL 2 BASIC12.13□□□□□ -0.474e-12■□□□□ 8.2
SND1Q7KZF4 CCT5-210ENST00000511995 1091 ntTSL 29.73□□□□□ -0.854e-12■□□□□ 8.2
SND1Q7KZF4 CCT5-213ENST00000515390 1728 ntTSL 2 BASIC9.44□□□□□ -0.94e-12■□□□□ 8.2
SND1Q7KZF4 CCT5-201ENST00000280326 3675 ntAPPRIS P1 TSL 1 (best) BASIC8.73□□□□□ -1.014e-12■□□□□ 8.2
SND1Q7KZF4 STIP1-208ENST00000540501 880 ntTSL 326.81■■□□□ 1.881e-6■□□□□ 8.2
SND1Q7KZF4 STIP1-211ENST00000543847 772 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-6■□□□□ 8.2
SND1Q7KZF4 YWHAG-201ENST00000307630 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.522e-14■□□□□ 8.2
SND1Q7KZF4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.9■□□□□ 0.461e-15■□□□□ 8.2
SND1Q7KZF4 DDX5-205ENST00000577922 996 ntTSL 521.09■□□□□ 0.974e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-220ENST00000581806 576 ntTSL 416.8■□□□□ 0.284e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-219ENST00000581697 580 ntTSL 515.76■□□□□ 0.114e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.02■□□□□ -04e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-207ENST00000578400 575 ntTSL 514.36□□□□□ -0.114e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-227ENST00000583894 712 ntTSL 210.42□□□□□ -0.744e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-206ENST00000578190 582 ntTSL 37.98□□□□□ -1.134e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-204ENST00000577787 838 ntTSL 26.87□□□□□ -1.314e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-230ENST00000584549 807 ntTSL 26.87□□□□□ -1.314e-18■□□□□ 8.1
SND1Q7KZF4 DDX5-225ENST00000583562 465 ntTSL 1 (best)6.39□□□□□ -1.394e-18■□□□□ 8.1
SND1Q7KZF4 HNRNPU-217ENST00000638952 5678 ntTSL 519.09■□□□□ 0.652e-20■□□□□ 8.1
SND1Q7KZF4 HNRNPU-228ENST00000640306 2917 ntTSL 518.4■□□□□ 0.542e-20■□□□□ 8.1
SND1Q7KZF4 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.52e-20■□□□□ 8.1
SND1Q7KZF4 HNRNPU-209ENST00000476241 4844 ntTSL 517.97■□□□□ 0.472e-20■□□□□ 8.1
SND1Q7KZF4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.332e-20■□□□□ 8.1
SND1Q7KZF4 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.192e-20■□□□□ 8.1
SND1Q7KZF4 CES2-210ENST00000568347 832 ntTSL 416.04■□□□□ 0.161e-6■□□□□ 8.1
SND1Q7KZF4 CES2-206ENST00000564420 862 ntTSL 315.55■□□□□ 0.081e-6■□□□□ 8.1
SND1Q7KZF4 CES2-209ENST00000567128 440 ntTSL 212.14□□□□□ -0.471e-6■□□□□ 8.1
SND1Q7KZF4 ADAM9-209ENST00000487273 3839 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.641e-9■□□□□ 8.1
SND1Q7KZF4 ADAM9-201ENST00000379917 3836 ntTSL 1 (best)10.94□□□□□ -0.661e-9■□□□□ 8.1
SND1Q7KZF4 ADAM9-204ENST00000468065 3755 ntTSL 1 (best)10.44□□□□□ -0.741e-9■□□□□ 8.1
SND1Q7KZF4 ADAM9-207ENST00000481873 3793 ntTSL 1 (best)10.44□□□□□ -0.741e-9■□□□□ 8.1
SND1Q7KZF4 ADAM9-202ENST00000463437 583 ntTSL 26.81□□□□□ -1.321e-9■□□□□ 8.1
SND1Q7KZF4 C5-205ENST00000489802 382 ntTSL 32.79□□□□□ -1.961e-9■□□□□ 8.1
SND1Q7KZF4 ACTN1-217ENST00000556203 564 ntTSL 315.73■□□□□ 0.113e-8■□□□□ 8.1
SND1Q7KZF4 UBE2D3-214ENST00000503282 584 ntTSL 222.81■■□□□ 1.243e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-216ENST00000503742 1977 ntTSL 1 (best)22.7■■□□□ 1.233e-6■□□□□ 8.1
SND1Q7KZF4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.223e-6■□□□□ 8.1
SND1Q7KZF4 UBE2D3-229ENST00000510129 582 ntTSL 322.12■■□□□ 1.133e-6■□□□□ 8.1
Retrieved 100 of 13,567 protein–RNA pairs in 255.7 ms