RNA–Protein interactions for RNA: ENST00000610359.4

MUC1-221, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best) BASIC

Gene MUC1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-221ENST00000610359 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
MUC1-221ENST00000610359 ABCC9O60706 1549 aa17.04■□□□□ 0.32
MUC1-221ENST00000610359 DNAJC5BQ9UF47 199 aa16.53■□□□□ 0.24
MUC1-221ENST00000610359 CCDC180Q9P1Z9 1646 aa16.52■□□□□ 0.24
MUC1-221ENST00000610359 RB1CC1Q8TDY2 1594 aa15.96■□□□□ 0.15
MUC1-221ENST00000610359 PABPN1Q86U42 306 aaKnown RBP eCLIP15.77■□□□□ 0.12
MUC1-221ENST00000610359 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
MUC1-221ENST00000610359 NACADO15069 1562 aa15.71■□□□□ 0.11
MUC1-221ENST00000610359 BICRAQ9NZM4 1560 aa15.59■□□□□ 0.09
MUC1-221ENST00000610359 DNAJC5Q9H3Z4 198 aa15.52■□□□□ 0.08
MUC1-221ENST00000610359 DCAF8L2P0C7V8 631 aa15.48■□□□□ 0.07
MUC1-221ENST00000610359 CC2D2AQ9P2K1 1620 aa15.39■□□□□ 0.05
MUC1-221ENST00000610359 CECR2Q9BXF3 1484 aa15.39■□□□□ 0.05
MUC1-221ENST00000610359 MYO15BQ96JP2 1530 aa15.31■□□□□ 0.04
MUC1-221ENST00000610359 EIF4G1Q04637 1599 aaKnown RBP15.21■□□□□ 0.03
MUC1-221ENST00000610359 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
MUC1-221ENST00000610359 SCRIBQ14160 1630 aa15.03■□□□□ -0
MUC1-221ENST00000610359 DCAF1Q9Y4B6 1507 aa14.92□□□□□ -0.02
MUC1-221ENST00000610359 AEBP2Q6ZN18 517 aaPredicted RBP14.91□□□□□ -0.02
MUC1-221ENST00000610359 ZCCHC6Q5VYS8 1495 aaKnown RBP14.9□□□□□ -0.02
MUC1-221ENST00000610359 CUX2O14529 1486 aa14.88□□□□□ -0.03
MUC1-221ENST00000610359 ERCC6Q03468 1493 aa14.69□□□□□ -0.06
MUC1-221ENST00000610359 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
MUC1-221ENST00000610359 NESP48681 1621 aa14.52□□□□□ -0.09
MUC1-221ENST00000610359 NCAPD3P42695 1498 aa14.51□□□□□ -0.09
MUC1-221ENST00000610359 THOC2Q8NI27 1593 aaKnown RBP14.49□□□□□ -0.09
MUC1-221ENST00000610359 ATAD2BQ9ULI0 1458 aa14.4□□□□□ -0.1
MUC1-221ENST00000610359 KIF21AQ7Z4S6 1674 aa14.36□□□□□ -0.11
MUC1-221ENST00000610359 HMGXB3Q12766 1538 aa14.36□□□□□ -0.11
MUC1-221ENST00000610359 SMARCA2P51531 1590 aa14.33□□□□□ -0.12
MUC1-221ENST00000610359 CHIC1Q5VXU3 224 aa14.31□□□□□ -0.12
MUC1-221ENST00000610359 SMARCA4P51532 1647 aa14.28□□□□□ -0.12
MUC1-221ENST00000610359 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
MUC1-221ENST00000610359 BAZ1BQ9UIG0 1483 aaKnown RBP14.21□□□□□ -0.13
MUC1-221ENST00000610359 BAZ1AQ9NRL2 1556 aaPredicted RBP14.19□□□□□ -0.14
MUC1-221ENST00000610359 PDS5BQ9NTI5 1447 aa14.16□□□□□ -0.14
MUC1-221ENST00000610359 PEG3Q9GZU2 1588 aa14.13□□□□□ -0.15
MUC1-221ENST00000610359 WDR62O43379 1518 aa14.12□□□□□ -0.15
MUC1-221ENST00000610359 MRC2Q9UBG0 1479 aa14.12□□□□□ -0.15
MUC1-221ENST00000610359 OSCARQ8IYS5 282 aa14.09□□□□□ -0.15
MUC1-221ENST00000610359 RIMBP3CA6NJZ7 1639 aa14.06□□□□□ -0.16
MUC1-221ENST00000610359 RIMBP3BA6NNM3 1639 aa14.06□□□□□ -0.16
MUC1-221ENST00000610359 RIMBP3Q9UFD9 1639 aa14.06□□□□□ -0.16
MUC1-221ENST00000610359 CADPSQ9ULU8 1353 aa14.03□□□□□ -0.16
MUC1-221ENST00000610359 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
MUC1-221ENST00000610359 CEP164Q9UPV0 1460 aa13.93□□□□□ -0.18
MUC1-221ENST00000610359 ARHGEF11O15085 1522 aa13.92□□□□□ -0.18
MUC1-221ENST00000610359 FANCD2Q9BXW9 1451 aa13.88□□□□□ -0.19
MUC1-221ENST00000610359 URB2Q14146 1524 aaKnown RBP13.85□□□□□ -0.19
MUC1-221ENST00000610359 WIZO95785 1651 aa13.82□□□□□ -0.2
MUC1-221ENST00000610359 CYB5RLQ6IPT4 315 aa13.81□□□□□ -0.2
MUC1-221ENST00000610359 TRHP20396 242 aaPredicted RBP13.8□□□□□ -0.2
MUC1-221ENST00000610359 CFTRP13569 1480 aa13.78□□□□□ -0.2
MUC1-221ENST00000610359 ZNF608Q9ULD9 1512 aaPredicted RBP13.77□□□□□ -0.21
MUC1-221ENST00000610359 ARAP1Q96P48 1450 aa13.75□□□□□ -0.21
MUC1-221ENST00000610359 CHD1O14646 1710 aa13.72□□□□□ -0.21
MUC1-221ENST00000610359 PRDM2Q13029 1718 aa13.69□□□□□ -0.22
MUC1-221ENST00000610359 IFT140Q96RY7 1462 aa13.68□□□□□ -0.22
MUC1-221ENST00000610359 EIF4G3O43432 1585 aaKnown RBP13.66□□□□□ -0.22
MUC1-221ENST00000610359 RSF1Q96T23 1441 aaPredicted RBP13.61□□□□□ -0.23
MUC1-221ENST00000610359 TOPBP1Q92547 1522 aa13.58□□□□□ -0.24
MUC1-221ENST00000610359 AQRO60306 1485 aaKnown RBP eCLIP13.55□□□□□ -0.24
MUC1-221ENST00000610359 TOP2AP11388 1531 aaKnown RBP13.54□□□□□ -0.24
MUC1-221ENST00000610359 TARBP1Q13395 1621 aaKnown RBP13.54□□□□□ -0.24
MUC1-221ENST00000610359 FBLN2P98095 1184 aa13.52□□□□□ -0.25
MUC1-221ENST00000610359 CLASP1Q7Z460 1538 aa13.49□□□□□ -0.25
MUC1-221ENST00000610359 DNMBPQ6XZF7 1577 aa13.48□□□□□ -0.25
MUC1-221ENST00000610359 ABCC8Q09428 1581 aa13.45□□□□□ -0.26
MUC1-221ENST00000610359 CCDC88BA6NC98 1476 aa13.41□□□□□ -0.26
MUC1-221ENST00000610359 POLA1P09884 1462 aaPredicted RBP13.41□□□□□ -0.26
MUC1-221ENST00000610359 SNAPC4Q5SXM2 1469 aa13.39□□□□□ -0.27
MUC1-221ENST00000610359 SYNJ1O43426 1573 aa13.39□□□□□ -0.27
MUC1-221ENST00000610359 RAD54L2Q9Y4B4 1467 aa13.38□□□□□ -0.27
MUC1-221ENST00000610359 TDRD9Q8NDG6 1382 aaKnown RBP13.37□□□□□ -0.27
MUC1-221ENST00000610359 GAPVD1Q14C86 1478 aa13.36□□□□□ -0.27
MUC1-221ENST00000610359 ILDR1Q86SU0 546 aaPredicted RBP13.35□□□□□ -0.27
MUC1-221ENST00000610359 KIF13AQ9H1H9 1805 aa13.34□□□□□ -0.27
MUC1-221ENST00000610359 CHMP7Q8WUX9 453 aaPredicted RBP13.32□□□□□ -0.28
MUC1-221ENST00000610359 WDR97A6NE52 1622 aa13.31□□□□□ -0.28
MUC1-221ENST00000610359 SOGA1O94964 1423 aa13.3□□□□□ -0.28
MUC1-221ENST00000610359 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
MUC1-221ENST00000610359 ERCC6L2Q5T890 1561 aa13.28□□□□□ -0.28
MUC1-221ENST00000610359 SYNJ2O15056 1496 aa13.28□□□□□ -0.28
MUC1-221ENST00000610359 PBRM1Q86U86 1689 aa13.25□□□□□ -0.29
MUC1-221ENST00000610359 GRIN2BQ13224 1484 aa13.25□□□□□ -0.29
MUC1-221ENST00000610359 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
MUC1-221ENST00000610359 KDM4FA0A1W2PPD8 638 aa13.2□□□□□ -0.3
MUC1-221ENST00000610359 CEP170Q5SW79 1584 aa13.16□□□□□ -0.3
MUC1-221ENST00000610359 CUX1P39880 1505 aa13.16□□□□□ -0.3
MUC1-221ENST00000610359 SHROOM2Q13796 1616 aa13.13□□□□□ -0.31
MUC1-221ENST00000610359 ABCA5Q8WWZ7 1642 aa13.12□□□□□ -0.31
MUC1-221ENST00000610359 GRIN2AQ12879 1464 aa13.1□□□□□ -0.31
MUC1-221ENST00000610359 NUP160Q12769 1436 aa13.08□□□□□ -0.32
MUC1-221ENST00000610359 KDM6BO15054 1643 aa13.07□□□□□ -0.32
MUC1-221ENST00000610359 ABCC10Q5T3U5 1492 aa13.07□□□□□ -0.32
MUC1-221ENST00000610359 TSPOAP1O95153 1857 aa13.07□□□□□ -0.32
MUC1-221ENST00000610359 FAM69CQ0P6D2 419 aa13.06□□□□□ -0.32
MUC1-221ENST00000610359 DIP2BQ9P265 1576 aa13.06□□□□□ -0.32
MUC1-221ENST00000610359 ABCA10Q8WWZ4 1543 aa13.05□□□□□ -0.32
MUC1-221ENST00000610359 ADAMTS12P58397 1594 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms