RNA–Protein interactions for RNA: ENST00000498431.5

MUC1-220, Transcript of mucin 1, cell surface associated, humanhuman

TSL 1 (best)

Gene MUC1, Length 667 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MUC1-220ENST00000498431 NISCHQ9Y2I1 1504 aa40.8■■■■■ 4.12
MUC1-220ENST00000498431 ABCC9O60706 1549 aa37■■■■□ 3.51
MUC1-220ENST00000498431 CCDC180Q9P1Z9 1646 aa36.7■■■■□ 3.47
MUC1-220ENST00000498431 RB1CC1Q8TDY2 1594 aa35.04■■■■□ 3.2
MUC1-220ENST00000498431 DNAJC5BQ9UF47 199 aa34.97■■■■□ 3.19
MUC1-220ENST00000498431 NACADO15069 1562 aa34.74■■■■□ 3.15
MUC1-220ENST00000498431 DCAF8L2P0C7V8 631 aa34.53■■■■□ 3.12
MUC1-220ENST00000498431 PABPN1Q86U42 306 aaKnown RBP eCLIP34.41■■■■□ 3.1
MUC1-220ENST00000498431 UNC13AQ9UPW8 1703 aa34.34■■■■□ 3.09
MUC1-220ENST00000498431 MYO15BQ96JP2 1530 aa34.16■■■■□ 3.06
MUC1-220ENST00000498431 BICRAQ9NZM4 1560 aa34.11■■■■□ 3.05
MUC1-220ENST00000498431 ZCCHC6Q5VYS8 1495 aaKnown RBP33.77■■■■□ 3
MUC1-220ENST00000498431 DCAF1Q9Y4B6 1507 aa33.65■■■□□ 2.98
MUC1-220ENST00000498431 SHROOM4Q9ULL8 1493 aa33.51■■■□□ 2.96
MUC1-220ENST00000498431 SCRIBQ14160 1630 aa33.49■■■□□ 2.95
MUC1-220ENST00000498431 CC2D2AQ9P2K1 1620 aa33.4■■■□□ 2.94
MUC1-220ENST00000498431 CECR2Q9BXF3 1484 aa33.32■■■□□ 2.92
MUC1-220ENST00000498431 EIF4G1Q04637 1599 aaKnown RBP33.26■■■□□ 2.91
MUC1-220ENST00000498431 DNAJC5Q9H3Z4 198 aa32.21■■■□□ 2.75
MUC1-220ENST00000498431 NCAPD3P42695 1498 aa32.09■■■□□ 2.73
MUC1-220ENST00000498431 ATAD2BQ9ULI0 1458 aa31.98■■■□□ 2.71
MUC1-220ENST00000498431 CUX2O14529 1486 aa31.92■■■□□ 2.7
MUC1-220ENST00000498431 ERCC6Q03468 1493 aa31.91■■■□□ 2.7
MUC1-220ENST00000498431 SMARCA4P51532 1647 aa31.89■■■□□ 2.7
MUC1-220ENST00000498431 SMARCA2P51531 1590 aa31.84■■■□□ 2.69
MUC1-220ENST00000498431 HMGXB3Q12766 1538 aa31.84■■■□□ 2.69
MUC1-220ENST00000498431 NESP48681 1621 aa31.74■■■□□ 2.67
MUC1-220ENST00000498431 BAZ1AQ9NRL2 1556 aaPredicted RBP31.66■■■□□ 2.66
MUC1-220ENST00000498431 BAZ1BQ9UIG0 1483 aaKnown RBP31.65■■■□□ 2.66
MUC1-220ENST00000498431 PEG3Q9GZU2 1588 aa31.56■■■□□ 2.64
MUC1-220ENST00000498431 MROH2BQ7Z745 1585 aa31.47■■■□□ 2.63
MUC1-220ENST00000498431 THOC2Q8NI27 1593 aaKnown RBP31.45■■■□□ 2.63
MUC1-220ENST00000498431 LAMC3Q9Y6N6 1575 aa31.4■■■□□ 2.62
MUC1-220ENST00000498431 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
MUC1-220ENST00000498431 PDS5BQ9NTI5 1447 aa31.2■■■□□ 2.59
MUC1-220ENST00000498431 CADPSQ9ULU8 1353 aa31.1■■■□□ 2.57
MUC1-220ENST00000498431 WIZO95785 1651 aa31.09■■■□□ 2.57
MUC1-220ENST00000498431 MRC2Q9UBG0 1479 aa30.99■■■□□ 2.55
MUC1-220ENST00000498431 WDR62O43379 1518 aa30.93■■■□□ 2.54
MUC1-220ENST00000498431 CEP164Q9UPV0 1460 aa30.81■■■□□ 2.52
MUC1-220ENST00000498431 FANCD2Q9BXW9 1451 aa30.77■■■□□ 2.52
MUC1-220ENST00000498431 TRIM41Q8WV44 630 aa30.72■■■□□ 2.51
MUC1-220ENST00000498431 RSF1Q96T23 1441 aaPredicted RBP30.72■■■□□ 2.51
MUC1-220ENST00000498431 CFTRP13569 1480 aa30.7■■■□□ 2.51
MUC1-220ENST00000498431 TOP2AP11388 1531 aaKnown RBP30.63■■■□□ 2.49
MUC1-220ENST00000498431 URB2Q14146 1524 aaKnown RBP30.57■■■□□ 2.48
MUC1-220ENST00000498431 OSCARQ8IYS5 282 aa30.42■■■□□ 2.46
MUC1-220ENST00000498431 PRDM2Q13029 1718 aa30.39■■■□□ 2.45
MUC1-220ENST00000498431 CCDC88BA6NC98 1476 aa30.31■■■□□ 2.44
MUC1-220ENST00000498431 ZNF608Q9ULD9 1512 aaPredicted RBP30.24■■■□□ 2.43
MUC1-220ENST00000498431 IFT140Q96RY7 1462 aa30.19■■■□□ 2.42
MUC1-220ENST00000498431 TOPBP1Q92547 1522 aa30.17■■■□□ 2.42
MUC1-220ENST00000498431 RIMBP3CA6NJZ7 1639 aa30.12■■■□□ 2.41
MUC1-220ENST00000498431 RIMBP3BA6NNM3 1639 aa30.12■■■□□ 2.41
MUC1-220ENST00000498431 RIMBP3Q9UFD9 1639 aa30.12■■■□□ 2.41
MUC1-220ENST00000498431 EIF4G3O43432 1585 aaKnown RBP30.04■■■□□ 2.4
MUC1-220ENST00000498431 DNMBPQ6XZF7 1577 aa30.03■■■□□ 2.4
MUC1-220ENST00000498431 ABCC8Q09428 1581 aa30.01■■■□□ 2.39
MUC1-220ENST00000498431 ARHGEF11O15085 1522 aa29.99■■■□□ 2.39
MUC1-220ENST00000498431 TARBP1Q13395 1621 aaKnown RBP29.93■■■□□ 2.38
MUC1-220ENST00000498431 AQRO60306 1485 aaKnown RBP eCLIP29.92■■■□□ 2.38
MUC1-220ENST00000498431 CHD1O14646 1710 aa29.88■■■□□ 2.37
MUC1-220ENST00000498431 POLA1P09884 1462 aaPredicted RBP29.85■■■□□ 2.37
MUC1-220ENST00000498431 RAD54L2Q9Y4B4 1467 aa29.77■■■□□ 2.36
MUC1-220ENST00000498431 CYB5RLQ6IPT4 315 aa29.76■■■□□ 2.35
MUC1-220ENST00000498431 FBLN2P98095 1184 aa29.73■■■□□ 2.35
MUC1-220ENST00000498431 ARAP1Q96P48 1450 aa29.69■■■□□ 2.34
MUC1-220ENST00000498431 TDRD9Q8NDG6 1382 aaKnown RBP29.68■■■□□ 2.34
MUC1-220ENST00000498431 SOGA1O94964 1423 aa29.68■■■□□ 2.34
MUC1-220ENST00000498431 FGD5Q6ZNL6 1462 aa29.62■■■□□ 2.33
MUC1-220ENST00000498431 SNAPC4Q5SXM2 1469 aa29.6■■■□□ 2.33
MUC1-220ENST00000498431 CUX1P39880 1505 aa29.59■■■□□ 2.33
MUC1-220ENST00000498431 WDR97A6NE52 1622 aa29.53■■■□□ 2.32
MUC1-220ENST00000498431 CLASP1Q7Z460 1538 aa29.51■■■□□ 2.32
MUC1-220ENST00000498431 TRHP20396 242 aaPredicted RBP29.49■■■□□ 2.31
MUC1-220ENST00000498431 MAGI1Q96QZ7 1491 aaPredicted RBP29.47■■■□□ 2.31
MUC1-220ENST00000498431 CHMP7Q8WUX9 453 aaPredicted RBP29.45■■■□□ 2.31
MUC1-220ENST00000498431 GRIN2BQ13224 1484 aa29.44■■■□□ 2.3
MUC1-220ENST00000498431 SYNJ1O43426 1573 aa29.43■■■□□ 2.3
MUC1-220ENST00000498431 SYNJ2O15056 1496 aa29.38■■■□□ 2.29
MUC1-220ENST00000498431 PBRM1Q86U86 1689 aa29.35■■■□□ 2.29
MUC1-220ENST00000498431 GAPVD1Q14C86 1478 aa29.32■■■□□ 2.28
MUC1-220ENST00000498431 ABCA5Q8WWZ7 1642 aa29.26■■■□□ 2.27
MUC1-220ENST00000498431 ABCA10Q8WWZ4 1543 aa29.25■■■□□ 2.27
MUC1-220ENST00000498431 SUPT5HO00267 1087 aaKnown RBP29.16■■■□□ 2.26
MUC1-220ENST00000498431 GRIN2AQ12879 1464 aa29.09■■■□□ 2.25
MUC1-220ENST00000498431 ERCC6L2Q5T890 1561 aa29.09■■■□□ 2.25
MUC1-220ENST00000498431 ADAMTS12P58397 1594 aa29.06■■■□□ 2.24
MUC1-220ENST00000498431 WRNQ14191 1432 aaPredicted RBP eCLIP29.06■■■□□ 2.24
MUC1-220ENST00000498431 CEP170Q5SW79 1584 aa29.03■■■□□ 2.24
MUC1-220ENST00000498431 BIVM-ERCC5R4GMW8 1640 aa29.02■■■□□ 2.24
MUC1-220ENST00000498431 TOP2BQ02880 1626 aa29.01■■■□□ 2.23
MUC1-220ENST00000498431 NUP160Q12769 1436 aa29■■■□□ 2.23
MUC1-220ENST00000498431 FHAD1B1AJZ9 1412 aa28.93■■■□□ 2.22
MUC1-220ENST00000498431 SHROOM2Q13796 1616 aa28.91■■■□□ 2.22
MUC1-220ENST00000498431 ERICH3Q5RHP9 1530 aa28.87■■■□□ 2.21
MUC1-220ENST00000498431 AEBP2Q6ZN18 517 aaPredicted RBP28.77■■■□□ 2.2
MUC1-220ENST00000498431 PRG4Q92954 1404 aaPredicted RBP28.74■■■□□ 2.19
MUC1-220ENST00000498431 JPH4Q96JJ6 628 aa28.68■■■□□ 2.18
MUC1-220ENST00000498431 KIF13AQ9H1H9 1805 aa28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 6.2 ms