RNA–Protein interactions for RNA: ENST00000556203.1

ACTN1-217, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-217ENST00000556203 NISCHQ9Y2I1 1504 aa36.93■■■■□ 3.5
ACTN1-217ENST00000556203 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
ACTN1-217ENST00000556203 ABCC9O60706 1549 aa32.24■■■□□ 2.75
ACTN1-217ENST00000556203 DCAF8L2P0C7V8 631 aa30.97■■■□□ 2.55
ACTN1-217ENST00000556203 RB1CC1Q8TDY2 1594 aa30.93■■■□□ 2.54
ACTN1-217ENST00000556203 NACADO15069 1562 aa30.88■■■□□ 2.53
ACTN1-217ENST00000556203 ZCCHC6Q5VYS8 1495 aaKnown RBP30.76■■■□□ 2.51
ACTN1-217ENST00000556203 MYO15BQ96JP2 1530 aa30.67■■■□□ 2.5
ACTN1-217ENST00000556203 DCAF1Q9Y4B6 1507 aa30.52■■■□□ 2.48
ACTN1-217ENST00000556203 PABPN1Q86U42 306 aaKnown RBP eCLIP30.16■■■□□ 2.42
ACTN1-217ENST00000556203 UNC13AQ9UPW8 1703 aa30.13■■■□□ 2.41
ACTN1-217ENST00000556203 BICRAQ9NZM4 1560 aa29.99■■■□□ 2.39
ACTN1-217ENST00000556203 SCRIBQ14160 1630 aa29.98■■■□□ 2.39
ACTN1-217ENST00000556203 SHROOM4Q9ULL8 1493 aa29.67■■■□□ 2.34
ACTN1-217ENST00000556203 DNAJC5BQ9UF47 199 aa29.66■■■□□ 2.34
ACTN1-217ENST00000556203 EIF4G1Q04637 1599 aaKnown RBP29.22■■■□□ 2.27
ACTN1-217ENST00000556203 CC2D2AQ9P2K1 1620 aa29.12■■■□□ 2.25
ACTN1-217ENST00000556203 CECR2Q9BXF3 1484 aa28.97■■■□□ 2.23
ACTN1-217ENST00000556203 SMARCA4P51532 1647 aa28.64■■■□□ 2.18
ACTN1-217ENST00000556203 BAZ1AQ9NRL2 1556 aaPredicted RBP28.62■■■□□ 2.17
ACTN1-217ENST00000556203 ATAD2BQ9ULI0 1458 aa28.54■■■□□ 2.16
ACTN1-217ENST00000556203 NCAPD3P42695 1498 aa28.53■■■□□ 2.16
ACTN1-217ENST00000556203 MROH2BQ7Z745 1585 aa28.48■■■□□ 2.15
ACTN1-217ENST00000556203 SMARCA2P51531 1590 aa28.47■■■□□ 2.15
ACTN1-217ENST00000556203 HMGXB3Q12766 1538 aa28.35■■■□□ 2.13
ACTN1-217ENST00000556203 PEG3Q9GZU2 1588 aa28.35■■■□□ 2.13
ACTN1-217ENST00000556203 BAZ1BQ9UIG0 1483 aaKnown RBP28.3■■■□□ 2.12
ACTN1-217ENST00000556203 RSF1Q96T23 1441 aaPredicted RBP28.15■■■□□ 2.1
ACTN1-217ENST00000556203 WIZO95785 1651 aa28.13■■■□□ 2.09
ACTN1-217ENST00000556203 NESP48681 1621 aa27.87■■■□□ 2.05
ACTN1-217ENST00000556203 TOP2AP11388 1531 aaKnown RBP27.85■■■□□ 2.05
ACTN1-217ENST00000556203 ERCC6Q03468 1493 aa27.8■■■□□ 2.04
ACTN1-217ENST00000556203 LAMC3Q9Y6N6 1575 aa27.74■■■□□ 2.03
ACTN1-217ENST00000556203 CADPSQ9ULU8 1353 aa27.72■■■□□ 2.03
ACTN1-217ENST00000556203 PDS5BQ9NTI5 1447 aa27.61■■■□□ 2.01
ACTN1-217ENST00000556203 CCDC88BA6NC98 1476 aa27.54■■■□□ 2
ACTN1-217ENST00000556203 CFTRP13569 1480 aa27.52■■■□□ 2
ACTN1-217ENST00000556203 CUX2O14529 1486 aa27.49■■□□□ 1.99
ACTN1-217ENST00000556203 KIF21AQ7Z4S6 1674 aa27.46■■□□□ 1.99
ACTN1-217ENST00000556203 SUPT5HO00267 1087 aaKnown RBP27.44■■□□□ 1.98
ACTN1-217ENST00000556203 THOC2Q8NI27 1593 aaKnown RBP27.41■■□□□ 1.98
ACTN1-217ENST00000556203 FANCD2Q9BXW9 1451 aa27.38■■□□□ 1.97
ACTN1-217ENST00000556203 CEP164Q9UPV0 1460 aa27.35■■□□□ 1.97
ACTN1-217ENST00000556203 MRC2Q9UBG0 1479 aa27.32■■□□□ 1.96
ACTN1-217ENST00000556203 WDR62O43379 1518 aa27.22■■□□□ 1.95
ACTN1-217ENST00000556203 PRDM2Q13029 1718 aa27.17■■□□□ 1.94
ACTN1-217ENST00000556203 URB2Q14146 1524 aaKnown RBP27.11■■□□□ 1.93
ACTN1-217ENST00000556203 TOPBP1Q92547 1522 aa26.94■■□□□ 1.9
ACTN1-217ENST00000556203 ABCC8Q09428 1581 aa26.91■■□□□ 1.9
ACTN1-217ENST00000556203 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
ACTN1-217ENST00000556203 IFT140Q96RY7 1462 aa26.79■■□□□ 1.88
ACTN1-217ENST00000556203 DNAJC5Q9H3Z4 198 aa26.74■■□□□ 1.87
ACTN1-217ENST00000556203 CUX1P39880 1505 aa26.71■■□□□ 1.87
ACTN1-217ENST00000556203 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
ACTN1-217ENST00000556203 ZNF608Q9ULD9 1512 aaPredicted RBP26.69■■□□□ 1.86
ACTN1-217ENST00000556203 FGD5Q6ZNL6 1462 aa26.64■■□□□ 1.86
ACTN1-217ENST00000556203 RAD54L2Q9Y4B4 1467 aa26.62■■□□□ 1.85
ACTN1-217ENST00000556203 SOGA1O94964 1423 aa26.61■■□□□ 1.85
ACTN1-217ENST00000556203 TARBP1Q13395 1621 aaKnown RBP26.6■■□□□ 1.85
ACTN1-217ENST00000556203 WRNQ14191 1432 aaPredicted RBP eCLIP26.54■■□□□ 1.84
ACTN1-217ENST00000556203 AQRO60306 1485 aaKnown RBP eCLIP26.54■■□□□ 1.84
ACTN1-217ENST00000556203 EIF4G3O43432 1585 aaKnown RBP26.53■■□□□ 1.84
ACTN1-217ENST00000556203 TDRD9Q8NDG6 1382 aaKnown RBP26.48■■□□□ 1.83
ACTN1-217ENST00000556203 SYNJ1O43426 1573 aa26.45■■□□□ 1.82
ACTN1-217ENST00000556203 TOP2BQ02880 1626 aa26.43■■□□□ 1.82
ACTN1-217ENST00000556203 BIVM-ERCC5R4GMW8 1640 aa26.41■■□□□ 1.82
ACTN1-217ENST00000556203 OSCARQ8IYS5 282 aa26.38■■□□□ 1.81
ACTN1-217ENST00000556203 WDR97A6NE52 1622 aa26.37■■□□□ 1.81
ACTN1-217ENST00000556203 ABCA10Q8WWZ4 1543 aa26.37■■□□□ 1.81
ACTN1-217ENST00000556203 GRIN2BQ13224 1484 aa26.3■■□□□ 1.8
ACTN1-217ENST00000556203 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
ACTN1-217ENST00000556203 SNAPC4Q5SXM2 1469 aa26.29■■□□□ 1.8
ACTN1-217ENST00000556203 FBLN2P98095 1184 aa26.26■■□□□ 1.79
ACTN1-217ENST00000556203 ABCA5Q8WWZ7 1642 aa26.24■■□□□ 1.79
ACTN1-217ENST00000556203 MAGI1Q96QZ7 1491 aaPredicted RBP26.22■■□□□ 1.79
ACTN1-217ENST00000556203 CHD1O14646 1710 aa26.17■■□□□ 1.78
ACTN1-217ENST00000556203 PBRM1Q86U86 1689 aa26.16■■□□□ 1.78
ACTN1-217ENST00000556203 CHMP7Q8WUX9 453 aaPredicted RBP26.16■■□□□ 1.78
ACTN1-217ENST00000556203 SYNJ2O15056 1496 aa26.12■■□□□ 1.77
ACTN1-217ENST00000556203 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
ACTN1-217ENST00000556203 ADAMTS12P58397 1594 aa26.01■■□□□ 1.75
ACTN1-217ENST00000556203 FHAD1B1AJZ9 1412 aa25.99■■□□□ 1.75
ACTN1-217ENST00000556203 KIF27Q86VH2 1401 aa25.99■■□□□ 1.75
ACTN1-217ENST00000556203 GRIN2AQ12879 1464 aa25.95■■□□□ 1.74
ACTN1-217ENST00000556203 ARHGEF11O15085 1522 aa25.93■■□□□ 1.74
ACTN1-217ENST00000556203 CLASP1Q7Z460 1538 aa25.93■■□□□ 1.74
ACTN1-217ENST00000556203 TRIM41Q8WV44 630 aa25.91■■□□□ 1.74
ACTN1-217ENST00000556203 RIMBP3CA6NJZ7 1639 aa25.9■■□□□ 1.74
ACTN1-217ENST00000556203 RIMBP3BA6NNM3 1639 aa25.9■■□□□ 1.74
ACTN1-217ENST00000556203 RIMBP3Q9UFD9 1639 aa25.9■■□□□ 1.74
ACTN1-217ENST00000556203 IGF1RP08069 1367 aa25.9■■□□□ 1.74
ACTN1-217ENST00000556203 NUP160Q12769 1436 aa25.85■■□□□ 1.73
ACTN1-217ENST00000556203 CEP170Q5SW79 1584 aa25.82■■□□□ 1.72
ACTN1-217ENST00000556203 CUL7Q14999 1698 aa25.76■■□□□ 1.71
ACTN1-217ENST00000556203 CARMIL1Q5VZK9 1371 aa25.75■■□□□ 1.71
ACTN1-217ENST00000556203 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
ACTN1-217ENST00000556203 CYB5RLQ6IPT4 315 aa25.74■■□□□ 1.71
ACTN1-217ENST00000556203 ARAP1Q96P48 1450 aa25.72■■□□□ 1.71
ACTN1-217ENST00000556203 JPH4Q96JJ6 628 aa25.61■■□□□ 1.69
ACTN1-217ENST00000556203 SHROOM2Q13796 1616 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms