Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGCS2P54868 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.3■□□□□ 0.84
HMGCS2P54868 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGCS2P54868 AP000997.3-201ENST00000623333 2250 ntBASIC20.3■□□□□ 0.84
HMGCS2P54868 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HMGCS2P54868 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
HMGCS2P54868 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.3■□□□□ 0.84
HMGCS2P54868 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
HMGCS2P54868 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.3■□□□□ 0.84
HMGCS2P54868 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
HMGCS2P54868 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.3■□□□□ 0.84
HMGCS2P54868 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGCS2P54868 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
HMGCS2P54868 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGCS2P54868 CYMP-203ENST00000474680 1263 ntBASIC20.29■□□□□ 0.84
HMGCS2P54868 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC20.29■□□□□ 0.84
HMGCS2P54868 AL031432.2-201ENST00000566714 459 ntBASIC20.29■□□□□ 0.84
HMGCS2P54868 AL928711.1-201ENST00000570165 459 ntBASIC20.29■□□□□ 0.84
HMGCS2P54868 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGCS2P54868 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC20.29■□□□□ 0.84
HMGCS2P54868 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGCS2P54868 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
HMGCS2P54868 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.29■□□□□ 0.84
HMGCS2P54868 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
HMGCS2P54868 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
HMGCS2P54868 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.28■□□□□ 0.84
HMGCS2P54868 PON3-203ENST00000427422 894 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGCS2P54868 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGCS2P54868 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.28■□□□□ 0.84
HMGCS2P54868 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGCS2P54868 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.28■□□□□ 0.84
HMGCS2P54868 GGTLC5P-201ENST00000617623 998 ntBASIC20.28■□□□□ 0.84
HMGCS2P54868 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.28■□□□□ 0.84
HMGCS2P54868 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
HMGCS2P54868 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
HMGCS2P54868 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
HMGCS2P54868 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HMGCS2P54868 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
HMGCS2P54868 AC002558.1-201ENST00000488906 803 ntBASIC20.27■□□□□ 0.84
HMGCS2P54868 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.27■□□□□ 0.84
HMGCS2P54868 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
HMGCS2P54868 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC20.27■□□□□ 0.84
HMGCS2P54868 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
HMGCS2P54868 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.27■□□□□ 0.84
HMGCS2P54868 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC20.27■□□□□ 0.83
HMGCS2P54868 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
HMGCS2P54868 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
HMGCS2P54868 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
HMGCS2P54868 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 RHOQP3-201ENST00000437982 621 ntBASIC20.26■□□□□ 0.83
HMGCS2P54868 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.26■□□□□ 0.83
HMGCS2P54868 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC20.26■□□□□ 0.83
HMGCS2P54868 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.26■□□□□ 0.83
HMGCS2P54868 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.26■□□□□ 0.83
HMGCS2P54868 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGCS2P54868 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
HMGCS2P54868 AC025580.3-201ENST00000617932 1424 ntBASIC20.26■□□□□ 0.83
HMGCS2P54868 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.26■□□□□ 0.83
HMGCS2P54868 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HMGCS2P54868 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms