Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.43■□□□□ 0.38
SNX3O60493 KRT18P23-201ENST00000435622 1283 ntBASIC17.43■□□□□ 0.38
SNX3O60493 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.43■□□□□ 0.38
SNX3O60493 KSR1P1-201ENST00000446298 240 ntBASIC17.43■□□□□ 0.38
SNX3O60493 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SNX3O60493 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.43■□□□□ 0.38
SNX3O60493 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 AL353708.3-201ENST00000610272 989 ntBASIC17.43■□□□□ 0.38
SNX3O60493 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.43■□□□□ 0.38
SNX3O60493 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
SNX3O60493 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 TSPY6P-201ENST00000448518 926 ntBASIC17.42■□□□□ 0.38
SNX3O60493 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
SNX3O60493 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.42■□□□□ 0.38
SNX3O60493 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SNX3O60493 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SNX3O60493 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.42■□□□□ 0.38
SNX3O60493 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 AC092053.1-201ENST00000605787 1936 ntBASIC17.41■□□□□ 0.38
SNX3O60493 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.41■□□□□ 0.38
SNX3O60493 AC092850.2-201ENST00000623821 2697 ntBASIC17.41■□□□□ 0.38
SNX3O60493 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.41■□□□□ 0.38
SNX3O60493 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.41■□□□□ 0.38
SNX3O60493 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.41■□□□□ 0.38
SNX3O60493 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SNX3O60493 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.41■□□□□ 0.38
SNX3O60493 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms