Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 KRASP1-201ENST00000407852 552 ntBASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 ABBA01031674.1-201ENST00000635145 728 ntBASIC12.98□□□□□ -0.33
SMKR1H3BMG3 AL023875.1-201ENST00000640777 796 ntBASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SMKR1H3BMG3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 AL596257.1-201ENST00000641463 2694 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 NIFKP9-201ENST00000419265 221 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 KRT16P5-201ENST00000455284 522 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 RPS2P4-201ENST00000476944 856 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 AL138781.1-201ENST00000566567 1274 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 MTDHP1-201ENST00000605323 784 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 LINC00554-201ENST00000564841 3011 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 CYP51A1P1-201ENST00000492267 1507 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 AC068418.2-201ENST00000577309 3703 ntBASIC12.97□□□□□ -0.33
SMKR1H3BMG3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.97□□□□□ -0.33
SMKR1H3BMG3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SMKR1H3BMG3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms