Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
COL28A1Q2UY09 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 FZD10-202ENST00000539839 3282 ntBASIC17.05■□□□□ 0.32
COL28A1Q2UY09 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 CNN2P11-201ENST00000429351 262 ntBASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AC009533.2-201ENST00000543664 586 ntBASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 GREM1-201ENST00000560677 623 ntTSL 4 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AL031598.1-201ENST00000561511 1773 ntBASIC17.05■□□□□ 0.32
COL28A1Q2UY09 Z98044.1-201ENST00000632503 1764 ntBASIC17.05■□□□□ 0.32
COL28A1Q2UY09 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
COL28A1Q2UY09 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 BCRP1-201ENST00000444246 691 ntBASIC17.04■□□□□ 0.32
COL28A1Q2UY09 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC105339.3-201ENST00000560043 636 ntBASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ANO7L1-203ENST00000602586 1720 ntBASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
COL28A1Q2UY09 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.03■□□□□ 0.32
COL28A1Q2UY09 YBX1P5-201ENST00000509441 847 ntBASIC17.03■□□□□ 0.32
COL28A1Q2UY09 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms