RNA–Protein interactions for RNA: ENST00000527275.5

SMPD1-203, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SMPD1, Length 2,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-203ENST00000527275 NISCHQ9Y2I1 1504 aa43.51■■■■■ 4.56
SMPD1-203ENST00000527275 CCDC180Q9P1Z9 1646 aa38.16■■■■□ 3.7
SMPD1-203ENST00000527275 ABCC9O60706 1549 aa36.65■■■■□ 3.46
SMPD1-203ENST00000527275 ZCCHC6Q5VYS8 1495 aaKnown RBP36.43■■■■□ 3.42
SMPD1-203ENST00000527275 DCAF8L2P0C7V8 631 aa36.18■■■■□ 3.38
SMPD1-203ENST00000527275 DCAF1Q9Y4B6 1507 aa35.95■■■■□ 3.35
SMPD1-203ENST00000527275 MYO15BQ96JP2 1530 aa35.74■■■■□ 3.31
SMPD1-203ENST00000527275 NACADO15069 1562 aa35.7■■■■□ 3.31
SMPD1-203ENST00000527275 RB1CC1Q8TDY2 1594 aa35.52■■■■□ 3.28
SMPD1-203ENST00000527275 SHROOM4Q9ULL8 1493 aa35.13■■■■□ 3.21
SMPD1-203ENST00000527275 SCRIBQ14160 1630 aa35.04■■■■□ 3.2
SMPD1-203ENST00000527275 UNC13AQ9UPW8 1703 aa34.78■■■■□ 3.16
SMPD1-203ENST00000527275 BICRAQ9NZM4 1560 aa34.48■■■■□ 3.11
SMPD1-203ENST00000527275 PABPN1Q86U42 306 aaKnown RBP eCLIP34.47■■■■□ 3.11
SMPD1-203ENST00000527275 CECR2Q9BXF3 1484 aa33.87■■■■□ 3.01
SMPD1-203ENST00000527275 BAZ1AQ9NRL2 1556 aaPredicted RBP33.63■■■□□ 2.97
SMPD1-203ENST00000527275 MROH2BQ7Z745 1585 aa33.6■■■□□ 2.97
SMPD1-203ENST00000527275 RSF1Q96T23 1441 aaPredicted RBP33.55■■■□□ 2.96
SMPD1-203ENST00000527275 SMARCA4P51532 1647 aa33.55■■■□□ 2.96
SMPD1-203ENST00000527275 SUPT5HO00267 1087 aaKnown RBP33.54■■■□□ 2.96
SMPD1-203ENST00000527275 EIF4G1Q04637 1599 aaKnown RBP33.49■■■□□ 2.95
SMPD1-203ENST00000527275 WIZO95785 1651 aa33.28■■■□□ 2.92
SMPD1-203ENST00000527275 PEG3Q9GZU2 1588 aa33.17■■■□□ 2.9
SMPD1-203ENST00000527275 ATAD2BQ9ULI0 1458 aa33.16■■■□□ 2.9
SMPD1-203ENST00000527275 CC2D2AQ9P2K1 1620 aa33.13■■■□□ 2.89
SMPD1-203ENST00000527275 SMARCA2P51531 1590 aa33.11■■■□□ 2.89
SMPD1-203ENST00000527275 NCAPD3P42695 1498 aa32.97■■■□□ 2.87
SMPD1-203ENST00000527275 BAZ1BQ9UIG0 1483 aaKnown RBP32.94■■■□□ 2.86
SMPD1-203ENST00000527275 TOP2AP11388 1531 aaKnown RBP32.91■■■□□ 2.86
SMPD1-203ENST00000527275 DNAJC5BQ9UF47 199 aa32.87■■■□□ 2.85
SMPD1-203ENST00000527275 HMGXB3Q12766 1538 aa32.85■■■□□ 2.85
SMPD1-203ENST00000527275 CCDC88BA6NC98 1476 aa32.59■■■□□ 2.81
SMPD1-203ENST00000527275 CADPSQ9ULU8 1353 aa32.1■■■□□ 2.73
SMPD1-203ENST00000527275 CFTRP13569 1480 aa32.09■■■□□ 2.73
SMPD1-203ENST00000527275 NESP48681 1621 aa32■■■□□ 2.71
SMPD1-203ENST00000527275 LAMC3Q9Y6N6 1575 aa31.92■■■□□ 2.7
SMPD1-203ENST00000527275 PRDM2Q13029 1718 aa31.82■■■□□ 2.69
SMPD1-203ENST00000527275 CHIC1Q5VXU3 224 aa31.79■■■□□ 2.68
SMPD1-203ENST00000527275 FANCD2Q9BXW9 1451 aa31.73■■■□□ 2.67
SMPD1-203ENST00000527275 ABCC8Q09428 1581 aa31.73■■■□□ 2.67
SMPD1-203ENST00000527275 PDS5BQ9NTI5 1447 aa31.71■■■□□ 2.67
SMPD1-203ENST00000527275 WRNQ14191 1432 aaPredicted RBP eCLIP31.6■■■□□ 2.65
SMPD1-203ENST00000527275 CEP164Q9UPV0 1460 aa31.58■■■□□ 2.65
SMPD1-203ENST00000527275 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.65
SMPD1-203ENST00000527275 TRIM41Q8WV44 630 aa31.57■■■□□ 2.64
SMPD1-203ENST00000527275 ERCC6Q03468 1493 aa31.47■■■□□ 2.63
SMPD1-203ENST00000527275 SYNJ1O43426 1573 aa31.47■■■□□ 2.63
SMPD1-203ENST00000527275 CUX1P39880 1505 aa31.45■■■□□ 2.62
SMPD1-203ENST00000527275 TOP2BQ02880 1626 aa31.38■■■□□ 2.61
SMPD1-203ENST00000527275 URB2Q14146 1524 aaKnown RBP31.36■■■□□ 2.61
SMPD1-203ENST00000527275 BIVM-ERCC5R4GMW8 1640 aa31.34■■■□□ 2.61
SMPD1-203ENST00000527275 MRC2Q9UBG0 1479 aa31.32■■■□□ 2.6
SMPD1-203ENST00000527275 TOPBP1Q92547 1522 aa31.32■■■□□ 2.6
SMPD1-203ENST00000527275 DNMBPQ6XZF7 1577 aa31.32■■■□□ 2.6
SMPD1-203ENST00000527275 THOC2Q8NI27 1593 aaKnown RBP31.2■■■□□ 2.59
SMPD1-203ENST00000527275 FGD5Q6ZNL6 1462 aa31.19■■■□□ 2.58
SMPD1-203ENST00000527275 WDR62O43379 1518 aa31.18■■■□□ 2.58
SMPD1-203ENST00000527275 POLA1P09884 1462 aaPredicted RBP31.14■■■□□ 2.58
SMPD1-203ENST00000527275 SOGA1O94964 1423 aa31.03■■■□□ 2.56
SMPD1-203ENST00000527275 RAD54L2Q9Y4B4 1467 aa31.03■■■□□ 2.56
SMPD1-203ENST00000527275 FAM9AQ8IZU1 332 aaPredicted RBP30.98■■■□□ 2.55
SMPD1-203ENST00000527275 CUX2O14529 1486 aa30.98■■■□□ 2.55
SMPD1-203ENST00000527275 RUSC2Q8N2Y8 1516 aa30.95■■■□□ 2.54
SMPD1-203ENST00000527275 ABCA10Q8WWZ4 1543 aa30.9■■■□□ 2.54
SMPD1-203ENST00000527275 TARBP1Q13395 1621 aaKnown RBP30.89■■■□□ 2.54
SMPD1-203ENST00000527275 IFT140Q96RY7 1462 aa30.85■■■□□ 2.53
SMPD1-203ENST00000527275 KIF27Q86VH2 1401 aa30.84■■■□□ 2.53
SMPD1-203ENST00000527275 WDR97A6NE52 1622 aa30.82■■■□□ 2.52
SMPD1-203ENST00000527275 EEA1Q15075 1411 aa30.81■■■□□ 2.52
SMPD1-203ENST00000527275 TDRD9Q8NDG6 1382 aaKnown RBP30.8■■■□□ 2.52
SMPD1-203ENST00000527275 CSRNP3Q8WYN3 585 aa30.75■■■□□ 2.51
SMPD1-203ENST00000527275 ZNF608Q9ULD9 1512 aaPredicted RBP30.73■■■□□ 2.51
SMPD1-203ENST00000527275 AQRO60306 1485 aaKnown RBP eCLIP30.69■■■□□ 2.5
SMPD1-203ENST00000527275 ABCA5Q8WWZ7 1642 aa30.68■■■□□ 2.5
SMPD1-203ENST00000527275 GAPVD1Q14C86 1478 aa30.68■■■□□ 2.5
SMPD1-203ENST00000527275 IGF1RP08069 1367 aa30.65■■■□□ 2.5
SMPD1-203ENST00000527275 EIF4G3O43432 1585 aaKnown RBP30.58■■■□□ 2.49
SMPD1-203ENST00000527275 EHMT2Q96KQ7 1210 aa30.58■■■□□ 2.49
SMPD1-203ENST00000527275 LOC105371045A0A1W2PR82 267 aa30.57■■■□□ 2.48
SMPD1-203ENST00000527275 ERICH3Q5RHP9 1530 aa30.52■■■□□ 2.48
SMPD1-203ENST00000527275 GRIN2BQ13224 1484 aa30.51■■■□□ 2.47
SMPD1-203ENST00000527275 PBRM1Q86U86 1689 aa30.5■■■□□ 2.47
SMPD1-203ENST00000527275 PRXQ9BXM0 1461 aa30.49■■■□□ 2.47
SMPD1-203ENST00000527275 CARMIL1Q5VZK9 1371 aa30.47■■■□□ 2.47
SMPD1-203ENST00000527275 KIF21BO75037 1637 aa30.43■■■□□ 2.46
SMPD1-203ENST00000527275 RAPGEF2Q9Y4G8 1499 aa30.42■■■□□ 2.46
SMPD1-203ENST00000527275 CUL7Q14999 1698 aa30.4■■■□□ 2.46
SMPD1-203ENST00000527275 SNAPC4Q5SXM2 1469 aa30.37■■■□□ 2.45
SMPD1-203ENST00000527275 GOLGA3Q08378 1498 aa30.37■■■□□ 2.45
SMPD1-203ENST00000527275 FHAD1B1AJZ9 1412 aa30.32■■■□□ 2.44
SMPD1-203ENST00000527275 UBTFP17480 764 aaKnown RBP30.32■■■□□ 2.44
SMPD1-203ENST00000527275 ADAMTS12P58397 1594 aa30.31■■■□□ 2.44
SMPD1-203ENST00000527275 MAGI1Q96QZ7 1491 aaPredicted RBP30.31■■■□□ 2.44
SMPD1-203ENST00000527275 SYNJ2O15056 1496 aa30.21■■■□□ 2.43
SMPD1-203ENST00000527275 FBLN2P98095 1184 aa30.2■■■□□ 2.43
SMPD1-203ENST00000527275 CHMP7Q8WUX9 453 aaPredicted RBP30.2■■■□□ 2.43
SMPD1-203ENST00000527275 TNIKQ9UKE5 1360 aa30.17■■■□□ 2.42
SMPD1-203ENST00000527275 GRIN2AQ12879 1464 aa30.14■■■□□ 2.42
SMPD1-203ENST00000527275 CHD1O14646 1710 aa30.02■■■□□ 2.4
SMPD1-203ENST00000527275 RANGAP1P46060 587 aaPredicted RBP30.01■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms