Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.3■□□□□ 0.04
AP3S2P59780 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC15.3■□□□□ 0.04
AP3S2P59780 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.3■□□□□ 0.04
AP3S2P59780 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.3■□□□□ 0.04
AP3S2P59780 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
AP3S2P59780 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
AP3S2P59780 FLJ38576-201ENST00000623820 2459 ntBASIC15.29■□□□□ 0.04
AP3S2P59780 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3S2P59780 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3S2P59780 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 F2R-202ENST00000505600 442 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SOX15-203ENST00000570788 1093 ntBASIC15.29■□□□□ 0.04
AP3S2P59780 VPS53-216ENST00000574029 585 ntTSL 4 BASIC15.29■□□□□ 0.04
AP3S2P59780 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.29■□□□□ 0.04
AP3S2P59780 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
AP3S2P59780 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.29■□□□□ 0.04
AP3S2P59780 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC15.29■□□□□ 0.04
AP3S2P59780 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
AP3S2P59780 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3S2P59780 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3S2P59780 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
AP3S2P59780 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
AP3S2P59780 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3S2P59780 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 AC022898.2-201ENST00000616822 1312 ntBASIC15.28■□□□□ 0.04
AP3S2P59780 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3S2P59780 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
AP3S2P59780 MIPEPP3-201ENST00000412105 444 ntBASIC15.28■□□□□ 0.04
AP3S2P59780 MCCD1P1-208ENST00000445732 328 ntBASIC15.28■□□□□ 0.04
AP3S2P59780 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.28■□□□□ 0.04
AP3S2P59780 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC15.28■□□□□ 0.04
AP3S2P59780 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3S2P59780 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC15.28■□□□□ 0.04
AP3S2P59780 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms