Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CLCF1Q9UBD9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 TSPY13P-201ENST00000338964 914 ntBASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 ATP5G2P3-201ENST00000429083 425 ntBASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 AC129492.7-201ENST00000622992 756 ntBASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC21.94■■□□□ 1.1
CLCF1Q9UBD9 BX255925.1-201ENST00000566954 1854 ntBASIC21.93■■□□□ 1.1
CLCF1Q9UBD9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.93■■□□□ 1.1
CLCF1Q9UBD9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CLCF1Q9UBD9 AL449106.1-201ENST00000608517 1980 ntBASIC21.93■■□□□ 1.1
CLCF1Q9UBD9 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CLCF1Q9UBD9 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 AC142086.6-201ENST00000621154 1765 ntBASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CLCF1Q9UBD9 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CLCF1Q9UBD9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.89■■□□□ 1.1
CLCF1Q9UBD9 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CLCF1Q9UBD9 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CLCF1Q9UBD9 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CLCF1Q9UBD9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CLCF1Q9UBD9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CLCF1Q9UBD9 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLCF1Q9UBD9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CLCF1Q9UBD9 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.88■■□□□ 1.09
CLCF1Q9UBD9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CLCF1Q9UBD9 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CLCF1Q9UBD9 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.85■■□□□ 1.09
CLCF1Q9UBD9 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLCF1Q9UBD9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLCF1Q9UBD9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CLCF1Q9UBD9 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
CLCF1Q9UBD9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 DUX4L9-201ENST00000449051 1259 ntBASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
CLCF1Q9UBD9 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
CLCF1Q9UBD9 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
CLCF1Q9UBD9 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 SPCS2P3-201ENST00000500401 656 ntBASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLCF1Q9UBD9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 DUX4L18-201ENST00000553347 1267 ntBASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLCF1Q9UBD9 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CLCF1Q9UBD9 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.8■■□□□ 1.08
CLCF1Q9UBD9 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CLCF1Q9UBD9 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CLCF1Q9UBD9 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms