Protein–RNA interactions for Protein: Q9HCL0

PCDH18, Protocadherin-18, humanhuman

Predictions only

Length 1,135 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH18Q9HCL0 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.47■■□□□ 1.67
PCDH18Q9HCL0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDH18Q9HCL0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDH18Q9HCL0 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.47■■□□□ 1.67
PCDH18Q9HCL0 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC25.47■■□□□ 1.67
PCDH18Q9HCL0 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDH18Q9HCL0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDH18Q9HCL0 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
PCDH18Q9HCL0 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
PCDH18Q9HCL0 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.67
PCDH18Q9HCL0 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDH18Q9HCL0 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PCDH18Q9HCL0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
PCDH18Q9HCL0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
PCDH18Q9HCL0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PCDH18Q9HCL0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PCDH18Q9HCL0 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
PCDH18Q9HCL0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC25.44■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDH18Q9HCL0 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.42■■□□□ 1.66
PCDH18Q9HCL0 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
PCDH18Q9HCL0 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC25.42■■□□□ 1.66
PCDH18Q9HCL0 AC126177.7-201ENST00000547904 679 ntBASIC25.42■■□□□ 1.66
PCDH18Q9HCL0 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
PCDH18Q9HCL0 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 AL359504.2-201ENST00000605506 1601 ntBASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDH18Q9HCL0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDH18Q9HCL0 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
PCDH18Q9HCL0 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC25.39■■□□□ 1.66
PCDH18Q9HCL0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.39■■□□□ 1.66
PCDH18Q9HCL0 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDH18Q9HCL0 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
PCDH18Q9HCL0 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
PCDH18Q9HCL0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.38■■□□□ 1.65
PCDH18Q9HCL0 AC092803.2-201ENST00000564287 1899 ntBASIC25.38■■□□□ 1.65
PCDH18Q9HCL0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.37■■□□□ 1.65
PCDH18Q9HCL0 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
PCDH18Q9HCL0 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDH18Q9HCL0 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDH18Q9HCL0 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.35■■□□□ 1.65
PCDH18Q9HCL0 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
PCDH18Q9HCL0 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.35■■□□□ 1.65
PCDH18Q9HCL0 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDH18Q9HCL0 AC145676.1-201ENST00000514988 2004 ntBASIC25.34■■□□□ 1.65
PCDH18Q9HCL0 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
PCDH18Q9HCL0 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDH18Q9HCL0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
PCDH18Q9HCL0 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 AC060814.1-201ENST00000554326 538 ntBASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.33■■□□□ 1.65
PCDH18Q9HCL0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 AL157400.5-201ENST00000507624 621 ntBASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 AC135731.1-201ENST00000569415 2548 ntBASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDH18Q9HCL0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 MIR4449-201ENST00000578365 66 ntBASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
PCDH18Q9HCL0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms