Protein–RNA interactions for Protein: Q99616

CCL13, C-C motif chemokine 13, humanhuman

Predictions only

Length 98 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL13Q99616 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCL13Q99616 AC092296.2-201ENST00000589470 999 ntBASIC20.57■□□□□ 0.88
CCL13Q99616 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCL13Q99616 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.57■□□□□ 0.88
CCL13Q99616 AL359504.2-201ENST00000605506 1601 ntBASIC20.56■□□□□ 0.88
CCL13Q99616 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCL13Q99616 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CCL13Q99616 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.56■□□□□ 0.88
CCL13Q99616 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL13Q99616 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCL13Q99616 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCL13Q99616 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL13Q99616 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC20.55■□□□□ 0.88
CCL13Q99616 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL13Q99616 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCL13Q99616 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.55■□□□□ 0.88
CCL13Q99616 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CCL13Q99616 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCL13Q99616 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CCL13Q99616 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC20.53■□□□□ 0.88
CCL13Q99616 AC142472.1-201ENST00000612013 1741 ntBASIC20.53■□□□□ 0.88
CCL13Q99616 ECEL1P2-201ENST00000461596 1295 ntBASIC20.53■□□□□ 0.88
CCL13Q99616 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCL13Q99616 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCL13Q99616 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCL13Q99616 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCL13Q99616 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
CCL13Q99616 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCL13Q99616 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.52■□□□□ 0.88
CCL13Q99616 RNF126P1-201ENST00000567452 1320 ntBASIC20.52■□□□□ 0.87
CCL13Q99616 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCL13Q99616 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCL13Q99616 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCL13Q99616 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
CCL13Q99616 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CCL13Q99616 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.5■□□□□ 0.87
CCL13Q99616 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.5■□□□□ 0.87
CCL13Q99616 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CCL13Q99616 SMPD5-203ENST00000639008 1464 ntBASIC20.5■□□□□ 0.87
CCL13Q99616 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCL13Q99616 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.49■□□□□ 0.87
CCL13Q99616 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.49■□□□□ 0.87
CCL13Q99616 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CCL13Q99616 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCL13Q99616 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CCL13Q99616 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCL13Q99616 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CCL13Q99616 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
CCL13Q99616 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.48■□□□□ 0.87
CCL13Q99616 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCL13Q99616 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.48■□□□□ 0.87
CCL13Q99616 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
CCL13Q99616 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC20.48■□□□□ 0.87
CCL13Q99616 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.47■□□□□ 0.87
CCL13Q99616 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 REST-210ENST00000638187 1334 ntTSL 5 BASIC20.47■□□□□ 0.87
CCL13Q99616 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCL13Q99616 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.46■□□□□ 0.87
CCL13Q99616 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCL13Q99616 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.45■□□□□ 0.86
CCL13Q99616 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCL13Q99616 RARRES2P2-201ENST00000394842 485 ntBASIC20.45■□□□□ 0.86
CCL13Q99616 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CCL13Q99616 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC20.45■□□□□ 0.86
CCL13Q99616 AC025884.2-201ENST00000553429 711 ntBASIC20.45■□□□□ 0.86
CCL13Q99616 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCL13Q99616 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCL13Q99616 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCL13Q99616 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCL13Q99616 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.44■□□□□ 0.86
CCL13Q99616 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.44■□□□□ 0.86
CCL13Q99616 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCL13Q99616 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCL13Q99616 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC20.43■□□□□ 0.86
CCL13Q99616 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCL13Q99616 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC20.43■□□□□ 0.86
CCL13Q99616 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCL13Q99616 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.42■□□□□ 0.86
CCL13Q99616 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.42■□□□□ 0.86
CCL13Q99616 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC20.42■□□□□ 0.86
CCL13Q99616 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.42■□□□□ 0.86
CCL13Q99616 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.42■□□□□ 0.86
CCL13Q99616 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCL13Q99616 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CCL13Q99616 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.41■□□□□ 0.86
CCL13Q99616 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
CCL13Q99616 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCL13Q99616 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms