Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC32.84■■■□□ 2.85
USHBP1Q8N6Y0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32.84■■■□□ 2.85
USHBP1Q8N6Y0 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC32.84■■■□□ 2.85
USHBP1Q8N6Y0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
USHBP1Q8N6Y0 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
USHBP1Q8N6Y0 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC32.83■■■□□ 2.85
USHBP1Q8N6Y0 AC103834.1-201ENST00000520383 144 ntBASIC32.83■■■□□ 2.85
USHBP1Q8N6Y0 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC32.83■■■□□ 2.85
USHBP1Q8N6Y0 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC32.82■■■□□ 2.85
USHBP1Q8N6Y0 WHAMMP3-201ENST00000611636 1609 ntBASIC32.82■■■□□ 2.84
USHBP1Q8N6Y0 AC139795.1-202ENST00000500444 432 ntBASIC32.82■■■□□ 2.84
USHBP1Q8N6Y0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC32.82■■■□□ 2.84
USHBP1Q8N6Y0 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
USHBP1Q8N6Y0 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC32.82■■■□□ 2.84
USHBP1Q8N6Y0 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC32.81■■■□□ 2.84
USHBP1Q8N6Y0 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
USHBP1Q8N6Y0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC32.81■■■□□ 2.84
USHBP1Q8N6Y0 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
USHBP1Q8N6Y0 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
USHBP1Q8N6Y0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
USHBP1Q8N6Y0 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
USHBP1Q8N6Y0 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC32.8■■■□□ 2.84
USHBP1Q8N6Y0 AC139426.1-201ENST00000568218 2529 ntBASIC32.8■■■□□ 2.84
USHBP1Q8N6Y0 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
USHBP1Q8N6Y0 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
USHBP1Q8N6Y0 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC32.79■■■□□ 2.84
USHBP1Q8N6Y0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
USHBP1Q8N6Y0 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC32.79■■■□□ 2.84
USHBP1Q8N6Y0 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
USHBP1Q8N6Y0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC32.78■■■□□ 2.84
USHBP1Q8N6Y0 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC32.78■■■□□ 2.84
USHBP1Q8N6Y0 AC018755.3-202ENST00000596210 929 ntBASIC32.78■■■□□ 2.84
USHBP1Q8N6Y0 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
USHBP1Q8N6Y0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
USHBP1Q8N6Y0 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC32.76■■■□□ 2.83
USHBP1Q8N6Y0 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC32.76■■■□□ 2.83
USHBP1Q8N6Y0 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
USHBP1Q8N6Y0 TRIR-205ENST00000592273 783 ntTSL 3 BASIC32.75■■■□□ 2.83
USHBP1Q8N6Y0 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
USHBP1Q8N6Y0 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
USHBP1Q8N6Y0 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC32.74■■■□□ 2.83
USHBP1Q8N6Y0 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 AC074183.2-201ENST00000623112 922 ntBASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
USHBP1Q8N6Y0 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC32.72■■■□□ 2.83
USHBP1Q8N6Y0 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
USHBP1Q8N6Y0 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC32.72■■■□□ 2.83
USHBP1Q8N6Y0 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC32.72■■■□□ 2.83
USHBP1Q8N6Y0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC32.72■■■□□ 2.83
USHBP1Q8N6Y0 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
USHBP1Q8N6Y0 AC009299.2-201ENST00000482477 511 ntBASIC32.71■■■□□ 2.83
USHBP1Q8N6Y0 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
USHBP1Q8N6Y0 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC32.7■■■□□ 2.83
USHBP1Q8N6Y0 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC32.7■■■□□ 2.82
USHBP1Q8N6Y0 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC32.7■■■□□ 2.82
USHBP1Q8N6Y0 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC32.69■■■□□ 2.82
USHBP1Q8N6Y0 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
USHBP1Q8N6Y0 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
USHBP1Q8N6Y0 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
USHBP1Q8N6Y0 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USHBP1Q8N6Y0 PROC-203ENST00000409048 1586 ntTSL 5 BASIC32.67■■■□□ 2.82
USHBP1Q8N6Y0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USHBP1Q8N6Y0 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USHBP1Q8N6Y0 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USHBP1Q8N6Y0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC32.66■■■□□ 2.82
USHBP1Q8N6Y0 YBX1P4-201ENST00000392794 808 ntBASIC32.66■■■□□ 2.82
USHBP1Q8N6Y0 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC32.66■■■□□ 2.82
USHBP1Q8N6Y0 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 IDNK-203ENST00000405990 629 ntTSL 2 BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 HYI-210ENST00000486909 905 ntTSL 5 BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC32.65■■■□□ 2.82
USHBP1Q8N6Y0 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
USHBP1Q8N6Y0 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
USHBP1Q8N6Y0 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC32.64■■■□□ 2.82
USHBP1Q8N6Y0 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC32.64■■■□□ 2.82
USHBP1Q8N6Y0 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC32.64■■■□□ 2.82
USHBP1Q8N6Y0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC32.63■■■□□ 2.81
USHBP1Q8N6Y0 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
USHBP1Q8N6Y0 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
USHBP1Q8N6Y0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC32.63■■■□□ 2.81
USHBP1Q8N6Y0 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC32.63■■■□□ 2.81
USHBP1Q8N6Y0 DRD5P2-201ENST00000421395 2012 ntBASIC32.62■■■□□ 2.81
USHBP1Q8N6Y0 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
USHBP1Q8N6Y0 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
USHBP1Q8N6Y0 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
USHBP1Q8N6Y0 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
USHBP1Q8N6Y0 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC32.61■■■□□ 2.81
USHBP1Q8N6Y0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC32.61■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms