Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
APOBP04114 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
APOBP04114 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC15.74■□□□□ 0.11
APOBP04114 GRAMD4P7-201ENST00000578182 1232 ntBASIC15.74■□□□□ 0.11
APOBP04114 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
APOBP04114 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
APOBP04114 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
APOBP04114 AC008406.3-201ENST00000620001 1374 ntBASIC15.73■□□□□ 0.11
APOBP04114 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOBP04114 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOBP04114 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOBP04114 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOBP04114 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
APOBP04114 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.72■□□□□ 0.11
APOBP04114 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC15.72■□□□□ 0.11
APOBP04114 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC15.71■□□□□ 0.11
APOBP04114 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC15.71■□□□□ 0.11
APOBP04114 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
APOBP04114 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
APOBP04114 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
APOBP04114 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
APOBP04114 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC15.7■□□□□ 0.1
APOBP04114 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
APOBP04114 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
APOBP04114 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
APOBP04114 HYI-210ENST00000486909 905 ntTSL 5 BASIC15.69■□□□□ 0.1
APOBP04114 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC15.69■□□□□ 0.1
APOBP04114 AC087393.1-201ENST00000582896 145 ntBASIC15.69■□□□□ 0.1
APOBP04114 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC15.69■□□□□ 0.1
APOBP04114 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC15.68■□□□□ 0.1
APOBP04114 AL139246.5-201ENST00000606645 996 ntBASIC15.68■□□□□ 0.1
APOBP04114 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
APOBP04114 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOBP04114 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC15.68■□□□□ 0.1
APOBP04114 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
APOBP04114 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOBP04114 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOBP04114 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC15.67■□□□□ 0.1
APOBP04114 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.67■□□□□ 0.1
APOBP04114 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOBP04114 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
APOBP04114 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
APOBP04114 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC15.67■□□□□ 0.1
APOBP04114 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC15.67■□□□□ 0.1
APOBP04114 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC15.67■□□□□ 0.1
APOBP04114 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
APOBP04114 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOBP04114 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
APOBP04114 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOBP04114 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC15.66■□□□□ 0.1
APOBP04114 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
APOBP04114 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
APOBP04114 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
APOBP04114 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC15.66■□□□□ 0.1
APOBP04114 MIR4787-201ENST00000607364 84 ntBASIC15.66■□□□□ 0.1
APOBP04114 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC15.66■□□□□ 0.1
APOBP04114 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOBP04114 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOBP04114 AC131281.2-201ENST00000520478 145 ntBASIC15.65■□□□□ 0.1
APOBP04114 UNC93B8-201ENST00000511903 705 ntBASIC15.65■□□□□ 0.1
APOBP04114 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
APOBP04114 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC15.65■□□□□ 0.1
APOBP04114 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
APOBP04114 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC15.65■□□□□ 0.1
APOBP04114 RARRES2P6-201ENST00000567333 442 ntBASIC15.65■□□□□ 0.1
APOBP04114 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
APOBP04114 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
APOBP04114 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOBP04114 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC15.63■□□□□ 0.09
APOBP04114 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC15.63■□□□□ 0.09
APOBP04114 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
APOBP04114 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
APOBP04114 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
APOBP04114 MTX2-204ENST00000443241 799 ntTSL 3 BASIC15.62■□□□□ 0.09
APOBP04114 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC15.62■□□□□ 0.09
APOBP04114 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC15.62■□□□□ 0.09
APOBP04114 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOBP04114 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOBP04114 AC019171.1-201ENST00000601251 1056 ntBASIC15.62■□□□□ 0.09
APOBP04114 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
APOBP04114 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC15.61■□□□□ 0.09
APOBP04114 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
APOBP04114 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC15.61■□□□□ 0.09
APOBP04114 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
APOBP04114 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC15.6■□□□□ 0.09
APOBP04114 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
APOBP04114 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
APOBP04114 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
APOBP04114 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
APOBP04114 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms