Protein–RNA interactions for Protein: O60906

SMPD2, Sphingomyelin phosphodiesterase 2, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD2O60906 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMPD2O60906 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SMPD2O60906 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.47■■□□□ 1.03
SMPD2O60906 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.47■■□□□ 1.03
SMPD2O60906 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SMPD2O60906 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
SMPD2O60906 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMPD2O60906 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMPD2O60906 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.46■■□□□ 1.03
SMPD2O60906 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SMPD2O60906 MOB2-207ENST00000614710 705 ntTSL 5 BASIC21.46■■□□□ 1.03
SMPD2O60906 WHAMMP3-201ENST00000611636 1609 ntBASIC21.46■■□□□ 1.03
SMPD2O60906 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.46■■□□□ 1.03
SMPD2O60906 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMPD2O60906 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.45■■□□□ 1.02
SMPD2O60906 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.02
SMPD2O60906 MED25-210ENST00000612854 801 ntTSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SMPD2O60906 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 MED25-214ENST00000622402 642 ntTSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SMPD2O60906 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SMPD2O60906 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMPD2O60906 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMPD2O60906 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SMPD2O60906 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
SMPD2O60906 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC21.43■■□□□ 1.02
SMPD2O60906 AL359258.2-201ENST00000564063 1566 ntBASIC21.42■■□□□ 1.02
SMPD2O60906 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMPD2O60906 AC007029.1-201ENST00000604183 313 ntBASIC21.42■■□□□ 1.02
SMPD2O60906 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SMPD2O60906 AL449106.1-201ENST00000608517 1980 ntBASIC21.41■■□□□ 1.02
SMPD2O60906 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMPD2O60906 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.41■■□□□ 1.02
SMPD2O60906 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.41■■□□□ 1.02
SMPD2O60906 DUX4L18-201ENST00000553347 1267 ntBASIC21.41■■□□□ 1.02
SMPD2O60906 AC129492.7-201ENST00000622992 756 ntBASIC21.41■■□□□ 1.02
SMPD2O60906 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
SMPD2O60906 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SMPD2O60906 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.4■■□□□ 1.02
SMPD2O60906 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SMPD2O60906 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMPD2O60906 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SMPD2O60906 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SMPD2O60906 AC133552.2-201ENST00000619106 1032 ntBASIC21.4■■□□□ 1.02
SMPD2O60906 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
SMPD2O60906 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.4■■□□□ 1.02
SMPD2O60906 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.39■■□□□ 1.01
SMPD2O60906 AL157400.5-201ENST00000507624 621 ntBASIC21.39■■□□□ 1.01
SMPD2O60906 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.39■■□□□ 1.01
SMPD2O60906 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SMPD2O60906 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMPD2O60906 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SMPD2O60906 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMPD2O60906 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMPD2O60906 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
SMPD2O60906 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.38■■□□□ 1.01
SMPD2O60906 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.38■■□□□ 1.01
SMPD2O60906 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
SMPD2O60906 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SMPD2O60906 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMPD2O60906 AL592293.1-201ENST00000502889 1188 ntBASIC21.37■■□□□ 1.01
SMPD2O60906 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMPD2O60906 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
SMPD2O60906 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
SMPD2O60906 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMPD2O60906 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SMPD2O60906 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.36■■□□□ 1.01
SMPD2O60906 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMPD2O60906 AC009831.1-201ENST00000580420 1582 ntBASIC21.36■■□□□ 1.01
SMPD2O60906 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMPD2O60906 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMPD2O60906 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
SMPD2O60906 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.34■■□□□ 1.01
SMPD2O60906 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMPD2O60906 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC21.34■■□□□ 1.01
SMPD2O60906 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMPD2O60906 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMPD2O60906 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMPD2O60906 SMPD5-203ENST00000639008 1464 ntBASIC21.33■■□□□ 1.01
SMPD2O60906 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMPD2O60906 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
SMPD2O60906 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC21.33■■□□□ 1.01
SMPD2O60906 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
SMPD2O60906 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SMPD2O60906 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMPD2O60906 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMPD2O60906 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMPD2O60906 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SMPD2O60906 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.32■■□□□ 1
SMPD2O60906 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
SMPD2O60906 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms