Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 NELFE-212ENST00000492539 583 ntTSL 325■■□□□ 1.598e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.498e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.438e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.03■■□□□ 1.288e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-212ENST00000542044 1544 ntTSL 522.98■■□□□ 1.278e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-226ENST00000640813 1283 ntTSL 522.92■■□□□ 1.268e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.67■■□□□ 1.228e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-211ENST00000492185 1786 ntTSL 222.18■■□□□ 1.148e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-207ENST00000454913 914 ntTSL 519.99■□□□□ 0.798e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.86■□□□□ 0.778e-8■□□□□ 9.6
DDX55Q8NHQ9 CORO7-232ENST00000576637 730 ntTSL 319.85■□□□□ 0.778e-8■□□□□ 9.6
DDX55Q8NHQ9 LZTR1-204ENST00000415817 2323 ntTSL 319.29■□□□□ 0.688e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-204ENST00000436289 906 ntTSL 519.2■□□□□ 0.668e-8■□□□□ 9.6
DDX55Q8NHQ9 TRIP10-206ENST00000596543 545 ntTSL 419.07■□□□□ 0.648e-8■□□□□ 9.6
DDX55Q8NHQ9 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.648e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.6■□□□□ 0.578e-8■□□□□ 9.6
DDX55Q8NHQ9 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.13■□□□□ 0.498e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC18.12■□□□□ 0.498e-8■□□□□ 9.6
DDX55Q8NHQ9 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.09■□□□□ 0.498e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.428e-8■□□□□ 9.6
DDX55Q8NHQ9 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.48e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.328e-8■□□□□ 9.6
DDX55Q8NHQ9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.268e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-224ENST00000546226 2112 ntTSL 215.77■□□□□ 0.118e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-204ENST00000433924 638 ntTSL 415.5■□□□□ 0.078e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-219ENST00000544182 1542 ntTSL 215.44■□□□□ 0.068e-8■□□□□ 9.6
DDX55Q8NHQ9 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.018e-8■□□□□ 9.6
DDX55Q8NHQ9 FAM189A1-204ENST00000560082 533 ntTSL 414.97□□□□□ -0.018e-8■□□□□ 9.6
DDX55Q8NHQ9 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.9□□□□□ -0.028e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-202ENST00000392841 1411 ntTSL 1 (best) BASIC14.86□□□□□ -0.038e-8■□□□□ 9.6
DDX55Q8NHQ9 NELFE-209ENST00000488426 1855 ntTSL 514.73□□□□□ -0.058e-8■□□□□ 9.6
DDX55Q8NHQ9 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.058e-8■□□□□ 9.6
DDX55Q8NHQ9 UBALD2-202ENST00000587913 286 ntTSL 314.2□□□□□ -0.149e-15■□□□□ 9.6
DDX55Q8NHQ9 ERP29-205ENST00000553161 916 ntTSL 1 (best)13.81□□□□□ -0.29e-15■□□□□ 9.6
DDX55Q8NHQ9 NELFE-205ENST00000441998 1075 ntAPPRIS ALT2 TSL 513.76□□□□□ -0.218e-8■□□□□ 9.6
DDX55Q8NHQ9 CORO7-208ENST00000571227 3578 ntTSL 512.95□□□□□ -0.348e-8■□□□□ 9.6
DDX55Q8NHQ9 ERP29-204ENST00000552052 284 ntTSL 312.84□□□□□ -0.359e-15■□□□□ 9.6
DDX55Q8NHQ9 CORO7-202ENST00000537233 3392 ntTSL 2 BASIC12.81□□□□□ -0.368e-8■□□□□ 9.6
DDX55Q8NHQ9 LZTR1-209ENST00000463909 3505 ntTSL 1 (best)12.65□□□□□ -0.388e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-210ENST00000539045 845 ntTSL 212.63□□□□□ -0.398e-8■□□□□ 9.6
DDX55Q8NHQ9 HMBS-217ENST00000543543 1796 ntTSL 512.43□□□□□ -0.428e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-209ENST00000498224 692 ntTSL 211.94□□□□□ -0.58e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-208ENST00000492076 613 ntTSL 38.05□□□□□ -1.128e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-206ENST00000480984 738 ntTSL 57.47□□□□□ -1.218e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-203ENST00000423633 668 ntTSL 26.92□□□□□ -1.38e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-205ENST00000456264 574 ntTSL 46.41□□□□□ -1.388e-8■□□□□ 9.6
DDX55Q8NHQ9 SLC20A1-202ENST00000413135 584 ntTSL 56.02□□□□□ -1.458e-8■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-216ENST00000514472 552 ntTSL 427.87■■■□□ 2.052e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-214ENST00000513166 594 ntTSL 425.74■■□□□ 1.712e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-209ENST00000507708 476 ntTSL 325.72■■□□□ 1.712e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-212ENST00000510911 709 ntTSL 425.72■■□□□ 1.712e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-204ENST00000426612 712 ntTSL 1 (best)25.07■■□□□ 1.62e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-211ENST00000509511 1341 ntTSL 1 (best)23.78■■□□□ 1.42e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-208ENST00000503708 770 ntTSL 423.34■■□□□ 1.332e-7■□□□□ 9.6
DDX55Q8NHQ9 FGFR4-205ENST00000430285 713 ntTSL 1 (best)21.15■□□□□ 0.982e-7■□□□□ 9.6
DDX55Q8NHQ9 CAPNS1-202ENST00000586851 616 ntTSL 38.18□□□□□ -1.16e-7■□□□□ 9.6
DDX55Q8NHQ9 ISYNA1-209ENST00000582287 696 ntTSL 1 (best)23.67■■□□□ 1.384e-8■□□□□ 9.6
DDX55Q8NHQ9 ISYNA1-207ENST00000581672 793 ntTSL 211.62□□□□□ -0.554e-8■□□□□ 9.6
DDX55Q8NHQ9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.292e-23■□□□□ 9.6
DDX55Q8NHQ9 MIF-202ENST00000465752 589 ntTSL 1 (best)22.05■■□□□ 1.122e-23■□□□□ 9.6
DDX55Q8NHQ9 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.522e-23■□□□□ 9.6
DDX55Q8NHQ9 APOL1-202ENST00000397278 2918 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.658e-36■□□□□ 9.6
DDX55Q8NHQ9 APOL1-203ENST00000397279 1564 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.668e-36■□□□□ 9.6
DDX55Q8NHQ9 APOL1-206ENST00000426053 2808 ntAPPRIS ALT2 TSL 2 BASIC10.11□□□□□ -0.798e-36■□□□□ 9.6
DDX55Q8NHQ9 APOL1-201ENST00000319136 3000 ntAPPRIS P4 TSL 1 (best) BASIC9.98□□□□□ -0.818e-36■□□□□ 9.6
DDX55Q8NHQ9 APOL1-205ENST00000422706 2901 ntAPPRIS ALT2 TSL 3 BASIC9.82□□□□□ -0.848e-36■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.119e-15■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.72■□□□□ 0.119e-15■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.41■□□□□ 0.069e-15■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.35■□□□□ 0.059e-15■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.019e-15■□□□□ 9.6
DDX55Q8NHQ9 MLXIPL-202ENST00000345114 3079 ntTSL 1 (best)14.37□□□□□ -0.119e-15■□□□□ 9.6
DDX55Q8NHQ9 KRT8-206ENST00000546900 523 ntTSL 324.96■■□□□ 1.592e-6■□□□□ 9.6
DDX55Q8NHQ9 KRT8-209ENST00000547176 250 ntTSL 516.89■□□□□ 0.292e-6■□□□□ 9.6
DDX55Q8NHQ9 KRT8-211ENST00000549176 770 ntTSL 213.73□□□□□ -0.212e-6■□□□□ 9.6
DDX55Q8NHQ9 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC29.59■■■□□ 2.337e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC27.14■■□□□ 1.947e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.927e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC24.94■■□□□ 1.587e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.55■■□□□ 1.047e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.08■□□□□ 0.327e-9■□□□□ 9.6
DDX55Q8NHQ9 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC14.37□□□□□ -0.117e-9■□□□□ 9.6
DDX55Q8NHQ9 LRRC75A-AS1-218ENST00000578380 310 ntTSL 326.19■■□□□ 1.783e-70■□□□□ 9.6
DDX55Q8NHQ9 LRRC75A-AS1-228ENST00000584141 564 ntTSL 222.77■■□□□ 1.243e-70■□□□□ 9.6
DDX55Q8NHQ9 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.25e-17■□□□□ 9.6
DDX55Q8NHQ9 LRRC75A-AS1-219ENST00000578757 920 ntTSL 1 (best)16.04■□□□□ 0.163e-70■□□□□ 9.6
DDX55Q8NHQ9 LDHA-205ENST00000422447 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.25e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-216ENST00000538451 1345 ntTSL 211.67□□□□□ -0.545e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-220ENST00000542179 1288 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.715e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-218ENST00000540430 2305 ntTSL 2 BASIC10.34□□□□□ -0.755e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC9.61□□□□□ -0.875e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-223ENST00000545215 1340 ntTSL 1 (best)8.83□□□□□ -15e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC8.54□□□□□ -1.045e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC8.39□□□□□ -1.075e-17■□□□□ 9.6
DDX55Q8NHQ9 LDHA-202ENST00000375710 2169 ntTSL 28.16□□□□□ -1.15e-17■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-204ENST00000503453 682 ntTSL 321.27■■□□□ 11e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.571e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.51e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-202ENST00000394225 664 ntTSL 218.17■□□□□ 0.51e-6■□□□□ 9.6
DDX55Q8NHQ9 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.461e-6■□□□□ 9.6
Retrieved 100 of 15,504 protein–RNA pairs in 154.3 ms