Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.52□□□□□ -1.854e-6■■■■■ 122.7
SF3B1O75533 ASPSCR1-221ENST00000585274 984 ntTSL 519.9■□□□□ 0.782e-6■■■■■ 122.7
SF3B1O75533 ASPSCR1-218ENST00000583744 539 ntTSL 416.95■□□□□ 0.32e-6■■■■■ 122.7
SF3B1O75533 ASPSCR1-206ENST00000578361 590 ntTSL 216.58■□□□□ 0.242e-6■■■■■ 122.7
SF3B1O75533 RAP1GAP-202ENST00000317967 600 ntTSL 217■□□□□ 0.312e-6■■■■■ 122.6
SF3B1O75533 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.951e-6■■■■■ 122.6
SF3B1O75533 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.911e-6■■■■■ 122.6
SF3B1O75533 CHCHD6-202ENST00000503119 1148 ntTSL 1 (best)20.56■□□□□ 0.881e-6■■■■■ 122.6
SF3B1O75533 CHCHD6-206ENST00000513253 690 ntTSL 312.2□□□□□ -0.461e-6■■■■■ 122.6
SF3B1O75533 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.371e-6■■■■■ 122.5
SF3B1O75533 AP000347.1-202ENST00000435868 847 ntBASIC19.29■□□□□ 0.683e-7■■■■■ 122.5
SF3B1O75533 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.44■□□□□ 0.383e-7■■■■■ 122.5
SF3B1O75533 DDX11-224ENST00000543026 2066 ntTSL 215.33■□□□□ 0.045e-8■■■■■ 122.5
SF3B1O75533 UBE2Q1-202ENST00000467683 370 ntTSL 512.84□□□□□ -0.358e-7■■■■■ 122.5
SF3B1O75533 ZNF24-204ENST00000589881 7419 ntTSL 1 (best) BASIC8.17□□□□□ -1.17e-7■■■■■ 122.5
SF3B1O75533 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.337e-7■■■■■ 122.5
SF3B1O75533 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.517e-7■■■■■ 122.5
SF3B1O75533 EXOC4-221ENST00000489931 578 ntTSL 47.33□□□□□ -1.243e-6■■■■■ 122.5
SF3B1O75533 EXOC4-209ENST00000469115 755 ntTSL 37.33□□□□□ -1.243e-6■■■■■ 122.5
SF3B1O75533 EXOC4-216ENST00000482089 628 ntTSL 47.33□□□□□ -1.243e-6■■■■■ 122.5
SF3B1O75533 CDK16-212ENST00000518391 785 ntTSL 316.95■□□□□ 0.32e-9■■■■■ 122.5
SF3B1O75533 RAP1GAP-203ENST00000374757 1328 ntTSL 526.61■■□□□ 1.852e-6■■■■■ 122.5
SF3B1O75533 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.883e-9■■■■■ 122.5
SF3B1O75533 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.49■□□□□ 0.553e-9■■■■■ 122.5
SF3B1O75533 MUS81-202ENST00000524647 1817 ntTSL 517.53■□□□□ 0.43e-9■■■■■ 122.5
SF3B1O75533 MUS81-214ENST00000531905 3420 ntTSL 511.61□□□□□ -0.553e-9■■■■■ 122.5
SF3B1O75533 VGLL4-206ENST00000418000 792 ntTSL 327.73■■■□□ 2.035e-6■■■■■ 122.4
SF3B1O75533 NDOR1-205ENST00000612145 564 ntTSL 426.47■■□□□ 1.832e-6■■■■■ 122.4
SF3B1O75533 TPCN1-222ENST00000552897 596 ntTSL 426.26■■□□□ 1.796e-6■■■■■ 122.4
SF3B1O75533 VGLL4-205ENST00000417466 894 ntTSL 324.74■■□□□ 1.555e-6■■■■■ 122.4
SF3B1O75533 EHBP1-204ENST00000405482 1311 ntTSL 224.68■■□□□ 1.546e-6■■■■■ 122.4
SF3B1O75533 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.59■■□□□ 1.376e-6■■■■■ 122.4
SF3B1O75533 TPCN1-216ENST00000551096 530 ntTSL 423.17■■□□□ 1.36e-6■■■■■ 122.4
SF3B1O75533 RAB11FIP4-203ENST00000578694 487 ntTSL 523.15■■□□□ 1.36e-6■■■■■ 122.4
SF3B1O75533 POLR2F-206ENST00000443002 1890 ntTSL 222.96■■□□□ 1.276e-6■■■■■ 122.4
SF3B1O75533 RAB11FIP4-208ENST00000582009 596 ntTSL 322.23■■□□□ 1.156e-6■■■■■ 122.4
SF3B1O75533 TPCN1-217ENST00000551099 570 ntTSL 422.09■■□□□ 1.136e-6■■■■■ 122.4
SF3B1O75533 TPCN1-212ENST00000549279 544 ntTSL 422.03■■□□□ 1.126e-6■■■■■ 122.4
SF3B1O75533 MAD1L1-213ENST00000455998 557 ntTSL 421.81■■□□□ 1.082e-7■■■■■ 122.4
SF3B1O75533 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.076e-6■■■■■ 122.4
SF3B1O75533 RAB11FIP4-204ENST00000579589 618 ntTSL 421.67■■□□□ 1.066e-6■■■■■ 122.4
SF3B1O75533 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.036e-6■■■■■ 122.4
SF3B1O75533 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 16e-6■■■■■ 122.4
SF3B1O75533 AC091551.1-202ENST00000588256 526 ntTSL 420.53■□□□□ 0.886e-6■■■■■ 122.4
SF3B1O75533 DDR1-236ENST00000431373 886 ntTSL 220.16■□□□□ 0.826e-6■■■■■ 122.4
SF3B1O75533 DDR1-233ENST00000421124 800 ntTSL 520.16■□□□□ 0.826e-6■■■■■ 122.4
SF3B1O75533 DDR1-241ENST00000460944 1248 ntTSL 520.01■□□□□ 0.796e-6■■■■■ 122.4
SF3B1O75533 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.91■□□□□ 0.786e-6■■■■■ 122.4
SF3B1O75533 DIP2B-204ENST00000549620 2676 ntTSL 1 (best)19.59■□□□□ 0.736e-6■■■■■ 122.4
SF3B1O75533 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.35■□□□□ 0.695e-6■■■■■ 122.4
SF3B1O75533 VGLL4-204ENST00000417206 581 ntTSL 419.35■□□□□ 0.695e-6■■■■■ 122.4
SF3B1O75533 DDR1-235ENST00000428153 1257 ntTSL 519.26■□□□□ 0.676e-6■■■■■ 122.4
SF3B1O75533 RANBP3-227ENST00000592266 589 ntTSL 419.01■□□□□ 0.632e-6■■■■■ 122.4
SF3B1O75533 DDR1-277ENST00000515219 481 ntTSL 519■□□□□ 0.636e-6■■■■■ 122.4
SF3B1O75533 SFXN5-221ENST00000495208 808 ntTSL 1 (best)18.74■□□□□ 0.595e-6■■■■■ 122.4
SF3B1O75533 ELP4-206ENST00000638317 450 ntTSL 318.22■□□□□ 0.516e-6■■■■■ 122.4
SF3B1O75533 SFXN5-220ENST00000490056 906 ntTSL 1 (best)18.04■□□□□ 0.485e-6■■■■■ 122.4
SF3B1O75533 FLNC-203ENST00000388853 570 ntTSL 217.86■□□□□ 0.456e-6■■■■■ 122.4
SF3B1O75533 PASK-207ENST00000437780 1009 ntTSL 317.72■□□□□ 0.436e-6■■■■■ 122.4
SF3B1O75533 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.52■□□□□ 0.396e-6■■■■■ 122.4
SF3B1O75533 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.46■□□□□ 0.386e-6■■■■■ 122.4
SF3B1O75533 ABHD2-210ENST00000569550 557 ntTSL 317.38■□□□□ 0.376e-6■■■■■ 122.4
SF3B1O75533 ETFB-203ENST00000593992 603 ntTSL 217.06■□□□□ 0.326e-6■■■■■ 122.4
SF3B1O75533 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.36e-6■■■■■ 122.4
SF3B1O75533 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.75■□□□□ 0.276e-6■■■■■ 122.4
SF3B1O75533 PASK-205ENST00000415234 538 ntTSL 316.5■□□□□ 0.236e-6■■■■■ 122.4
SF3B1O75533 LINC01006-206ENST00000447933 766 ntTSL 316.45■□□□□ 0.226e-6■■■■■ 122.4
SF3B1O75533 ETFB-205ENST00000596253 575 ntTSL 316.21■□□□□ 0.196e-6■■■■■ 122.4
SF3B1O75533 VPS16-205ENST00000453689 966 ntTSL 315.94■□□□□ 0.146e-6■■■■■ 122.4
SF3B1O75533 DDR1-244ENST00000482873 2673 ntTSL 515.6■□□□□ 0.096e-6■■■■■ 122.4
SF3B1O75533 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.45■□□□□ 0.066e-6■■■■■ 122.4
SF3B1O75533 ZMIZ1-203ENST00000472035 457 ntTSL 215.32■□□□□ 0.046e-6■■■■■ 122.4
SF3B1O75533 VGLL4-207ENST00000419541 466 ntTSL 315.29■□□□□ 0.045e-6■■■■■ 122.4
SF3B1O75533 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.016e-6■■■■■ 122.4
SF3B1O75533 ELP4-217ENST00000639182 857 ntTSL 514.66□□□□□ -0.066e-6■■■■■ 122.4
SF3B1O75533 CNTROB-214ENST00000576723 2461 ntTSL 214.37□□□□□ -0.116e-6■■■■■ 122.4
SF3B1O75533 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC14.23□□□□□ -0.136e-6■■■■■ 122.4
SF3B1O75533 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.146e-6■■■■■ 122.4
SF3B1O75533 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.156e-6■■■■■ 122.4
SF3B1O75533 NUP85-201ENST00000245544 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.186e-6■■■■■ 122.4
SF3B1O75533 CLPB-204ENST00000445069 815 ntTSL 513.71□□□□□ -0.216e-6■■■■■ 122.4
SF3B1O75533 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC13.55□□□□□ -0.246e-6■■■■■ 122.4
SF3B1O75533 ELP4-202ENST00000379163 1700 ntTSL 2 BASIC13.53□□□□□ -0.246e-6■■■■■ 122.4
SF3B1O75533 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC13.48□□□□□ -0.256e-6■■■■■ 122.4
SF3B1O75533 DSE-207ENST00000607094 2664 ntTSL 213.46□□□□□ -0.256e-6■■■■■ 122.4
SF3B1O75533 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.266e-6■■■■■ 122.4
SF3B1O75533 TPCN1-215ENST00000550873 527 ntTSL 513.4□□□□□ -0.266e-6■■■■■ 122.4
SF3B1O75533 NAA38-202ENST00000570555 783 ntTSL 513.37□□□□□ -0.276e-6■■■■■ 122.4
SF3B1O75533 PARPBP-210ENST00000541394 2452 ntTSL 2 BASIC13.29□□□□□ -0.286e-6■■■■■ 122.4
SF3B1O75533 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.316e-6■■■■■ 122.4
SF3B1O75533 VPS16-202ENST00000380445 2750 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.326e-6■■■■■ 122.4
SF3B1O75533 AL590542.1-202ENST00000453463 514 ntTSL 213.05□□□□□ -0.326e-6■■■■■ 122.4
SF3B1O75533 ELP4-214ENST00000638917 2306 ntTSL 513□□□□□ -0.336e-6■■■■■ 122.4
SF3B1O75533 YIPF3-210ENST00000502714 795 ntTSL 412.93□□□□□ -0.344e-6■■■■■ 122.4
SF3B1O75533 ELP4-205ENST00000638184 1330 ntTSL 512.78□□□□□ -0.366e-6■■■■■ 122.4
SF3B1O75533 IL20RB-204ENST00000484501 427 ntTSL 412.76□□□□□ -0.376e-6■■■■■ 122.4
SF3B1O75533 DDR1-226ENST00000376569 3783 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.386e-6■■■■■ 122.4
SF3B1O75533 ELP4-221ENST00000640081 2385 ntTSL 512.58□□□□□ -0.46e-6■■■■■ 122.4
SF3B1O75533 DDR1-224ENST00000376567 3832 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.416e-6■■■■■ 122.4
SF3B1O75533 CNTROB-207ENST00000571632 2960 ntTSL 212.45□□□□□ -0.426e-6■■■■■ 122.4
Retrieved 100 of 46,956 protein–RNA pairs in 1285.4 ms