RNA–Protein interactions for RNA: ENST00000482873.6

DDR1-244, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 5

Gene DDR1, Length 2,673 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-244ENST00000482873 NISCHQ9Y2I1 1504 aa31.29■■■□□ 2.6
DDR1-244ENST00000482873 SHROOM4Q9ULL8 1493 aa27.18■■□□□ 1.94
DDR1-244ENST00000482873 DCAF8L2P0C7V8 631 aa26.67■■□□□ 1.86
DDR1-244ENST00000482873 SUPT5HO00267 1087 aaKnown RBP26.6■■□□□ 1.85
DDR1-244ENST00000482873 ZCCHC6Q5VYS8 1495 aaKnown RBP26.38■■□□□ 1.81
DDR1-244ENST00000482873 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
DDR1-244ENST00000482873 CHIC1Q5VXU3 224 aa25.56■■□□□ 1.68
DDR1-244ENST00000482873 MYO15BQ96JP2 1530 aa25.43■■□□□ 1.66
DDR1-244ENST00000482873 DCAF1Q9Y4B6 1507 aa25.39■■□□□ 1.65
DDR1-244ENST00000482873 HRCP23327 699 aa25.36■■□□□ 1.65
DDR1-244ENST00000482873 ABCC9O60706 1549 aa25.25■■□□□ 1.63
DDR1-244ENST00000482873 SCRIBQ14160 1630 aa25.13■■□□□ 1.61
DDR1-244ENST00000482873 LOC105371045A0A1W2PR82 267 aa25.04■■□□□ 1.6
DDR1-244ENST00000482873 PCGF6Q9BYE7 350 aa25.03■■□□□ 1.6
DDR1-244ENST00000482873 PPARGC1BQ86YN6 1023 aaKnown RBP24.87■■□□□ 1.57
DDR1-244ENST00000482873 RSF1Q96T23 1441 aaPredicted RBP24.83■■□□□ 1.57
DDR1-244ENST00000482873 EHMT2Q96KQ7 1210 aa24.7■■□□□ 1.55
DDR1-244ENST00000482873 FAM9AQ8IZU1 332 aaPredicted RBP24.68■■□□□ 1.54
DDR1-244ENST00000482873 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.54
DDR1-244ENST00000482873 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
DDR1-244ENST00000482873 RB1CC1Q8TDY2 1594 aa24.57■■□□□ 1.52
DDR1-244ENST00000482873 NACADO15069 1562 aa24.52■■□□□ 1.52
DDR1-244ENST00000482873 PELP1Q8IZL8 1130 aaKnown RBP24.49■■□□□ 1.51
DDR1-244ENST00000482873 MROH2BQ7Z745 1585 aa24.45■■□□□ 1.5
DDR1-244ENST00000482873 TRIM26Q12899 539 aaPredicted RBP24.32■■□□□ 1.48
DDR1-244ENST00000482873 WIZO95785 1651 aa24.3■■□□□ 1.48
DDR1-244ENST00000482873 PABPN1Q86U42 306 aaKnown RBP eCLIP24.18■■□□□ 1.46
DDR1-244ENST00000482873 BAZ1AQ9NRL2 1556 aaPredicted RBP23.98■■□□□ 1.43
DDR1-244ENST00000482873 ZEB1P37275 1124 aaPredicted RBP23.97■■□□□ 1.43
DDR1-244ENST00000482873 UNC13AQ9UPW8 1703 aa23.93■■□□□ 1.42
DDR1-244ENST00000482873 MYT1Q01538 1121 aa23.89■■□□□ 1.42
DDR1-244ENST00000482873 ABCC8Q09428 1581 aa23.84■■□□□ 1.41
DDR1-244ENST00000482873 CCDC88BA6NC98 1476 aa23.83■■□□□ 1.41
DDR1-244ENST00000482873 SMARCA4P51532 1647 aa23.82■■□□□ 1.4
DDR1-244ENST00000482873 TTBK1Q5TCY1 1321 aaPredicted RBP23.82■■□□□ 1.4
DDR1-244ENST00000482873 SCAF1Q9H7N4 1312 aaKnown RBP23.79■■□□□ 1.4
DDR1-244ENST00000482873 TOP2AP11388 1531 aaKnown RBP23.75■■□□□ 1.39
DDR1-244ENST00000482873 BICRAQ9NZM4 1560 aa23.71■■□□□ 1.39
DDR1-244ENST00000482873 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
DDR1-244ENST00000482873 EIF4G1Q04637 1599 aaKnown RBP23.68■■□□□ 1.38
DDR1-244ENST00000482873 SOGA1O94964 1423 aa23.63■■□□□ 1.37
DDR1-244ENST00000482873 RUSC2Q8N2Y8 1516 aa23.55■■□□□ 1.36
DDR1-244ENST00000482873 UBTFP17480 764 aaKnown RBP23.53■■□□□ 1.36
DDR1-244ENST00000482873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.49■■□□□ 1.35
DDR1-244ENST00000482873 CSRNP3Q8WYN3 585 aa23.45■■□□□ 1.34
DDR1-244ENST00000482873 RANGAP1P46060 587 aaPredicted RBP23.41■■□□□ 1.34
DDR1-244ENST00000482873 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
DDR1-244ENST00000482873 WRNQ14191 1432 aaPredicted RBP eCLIP23.34■■□□□ 1.33
DDR1-244ENST00000482873 ATAD2BQ9ULI0 1458 aa23.32■■□□□ 1.32
DDR1-244ENST00000482873 CCER1Q8TC90 406 aaPredicted RBP23.32■■□□□ 1.32
DDR1-244ENST00000482873 ACIN1Q9UKV3 1341 aaKnown RBP23.31■■□□□ 1.32
DDR1-244ENST00000482873 BAZ1BQ9UIG0 1483 aaKnown RBP23.29■■□□□ 1.32
DDR1-244ENST00000482873 NEUROD1Q13562 356 aa23.28■■□□□ 1.32
DDR1-244ENST00000482873 TNIKQ9UKE5 1360 aa23.23■■□□□ 1.31
DDR1-244ENST00000482873 SYNJ1O43426 1573 aa23.2■■□□□ 1.3
DDR1-244ENST00000482873 PEG3Q9GZU2 1588 aa23.19■■□□□ 1.3
DDR1-244ENST00000482873 DIEXFQ68CQ4 756 aaKnown RBP23.12■■□□□ 1.29
DDR1-244ENST00000482873 EEA1Q15075 1411 aa23.11■■□□□ 1.29
DDR1-244ENST00000482873 GOLGA3Q08378 1498 aa23.11■■□□□ 1.29
DDR1-244ENST00000482873 GTF3C3Q9Y5Q9 886 aa23.11■■□□□ 1.29
DDR1-244ENST00000482873 CENPBP07199 599 aaPredicted RBP23.03■■□□□ 1.28
DDR1-244ENST00000482873 HNRNPUL2Q1KMD3 747 aaKnown RBP23.03■■□□□ 1.28
DDR1-244ENST00000482873 RAPGEF2Q9Y4G8 1499 aa22.99■■□□□ 1.27
DDR1-244ENST00000482873 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
DDR1-244ENST00000482873 CLIP1P30622 1438 aa22.96■■□□□ 1.27
DDR1-244ENST00000482873 APLP2Q06481 763 aa22.88■■□□□ 1.25
DDR1-244ENST00000482873 KIF21BO75037 1637 aa22.81■■□□□ 1.24
DDR1-244ENST00000482873 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
DDR1-244ENST00000482873 TOP2BQ02880 1626 aa22.79■■□□□ 1.24
DDR1-244ENST00000482873 ZNF316A6NFI3 1004 aaPredicted RBP22.76■■□□□ 1.23
DDR1-244ENST00000482873 VPS8Q8N3P4 1428 aa22.76■■□□□ 1.23
DDR1-244ENST00000482873 CUX1P39880 1505 aa22.72■■□□□ 1.23
DDR1-244ENST00000482873 YTHDC1Q96MU7 727 aaKnown RBP22.68■■□□□ 1.22
DDR1-244ENST00000482873 KANK4Q5T7N3 995 aaPredicted RBP22.67■■□□□ 1.22
DDR1-244ENST00000482873 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
DDR1-244ENST00000482873 BIVM-ERCC5R4GMW8 1640 aa22.63■■□□□ 1.21
DDR1-244ENST00000482873 CFTRP13569 1480 aa22.62■■□□□ 1.21
DDR1-244ENST00000482873 PRXQ9BXM0 1461 aa22.61■■□□□ 1.21
DDR1-244ENST00000482873 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
DDR1-244ENST00000482873 KIF27Q86VH2 1401 aa22.59■■□□□ 1.21
DDR1-244ENST00000482873 MIER1Q8N108 512 aa22.58■■□□□ 1.2
DDR1-244ENST00000482873 DNAJC5BQ9UF47 199 aa22.57■■□□□ 1.2
DDR1-244ENST00000482873 ITGAEP38570 1179 aa22.56■■□□□ 1.2
DDR1-244ENST00000482873 ARAP1Q96P48 1450 aa22.54■■□□□ 1.2
DDR1-244ENST00000482873 CUX2O14529 1486 aa22.5■■□□□ 1.19
DDR1-244ENST00000482873 P3H3Q8IVL6 736 aa22.5■■□□□ 1.19
DDR1-244ENST00000482873 CADPSQ9ULU8 1353 aa22.48■■□□□ 1.19
DDR1-244ENST00000482873 ATP1B4Q9UN42 357 aaPredicted RBP22.45■■□□□ 1.19
DDR1-244ENST00000482873 ERICH3Q5RHP9 1530 aa22.45■■□□□ 1.18
DDR1-244ENST00000482873 IGF1RP08069 1367 aa22.43■■□□□ 1.18
DDR1-244ENST00000482873 ARHGAP35Q9NRY4 1499 aa22.38■■□□□ 1.17
DDR1-244ENST00000482873 FGD5Q6ZNL6 1462 aa22.38■■□□□ 1.17
DDR1-244ENST00000482873 CARMIL1Q5VZK9 1371 aa22.35■■□□□ 1.17
DDR1-244ENST00000482873 NESP48681 1621 aa22.33■■□□□ 1.16
DDR1-244ENST00000482873 RAD54L2Q9Y4B4 1467 aa22.3■■□□□ 1.16
DDR1-244ENST00000482873 FANCD2Q9BXW9 1451 aa22.28■■□□□ 1.16
DDR1-244ENST00000482873 DHX57Q6P158 1386 aaKnown RBP22.25■■□□□ 1.15
DDR1-244ENST00000482873 CCNB3Q8WWL7 1395 aa22.21■■□□□ 1.15
DDR1-244ENST00000482873 FAM50AQ14320 339 aaKnown RBP22.2■■□□□ 1.14
DDR1-244ENST00000482873 RRBP1Q9P2E9 1410 aaKnown RBP22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms