RNA–Protein interactions for RNA: ENST00000428153.6

DDR1-235, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 5

Gene DDR1, Length 1,257 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-235ENST00000428153 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
DDR1-235ENST00000428153 CCDC180Q9P1Z9 1646 aa39.23■■■■□ 3.87
DDR1-235ENST00000428153 ABCC9O60706 1549 aa39.03■■■■□ 3.84
DDR1-235ENST00000428153 RB1CC1Q8TDY2 1594 aa37.29■■■■□ 3.56
DDR1-235ENST00000428153 NACADO15069 1562 aa37.08■■■■□ 3.53
DDR1-235ENST00000428153 MYO15BQ96JP2 1530 aa36.69■■■■□ 3.46
DDR1-235ENST00000428153 DCAF8L2P0C7V8 631 aa36.66■■■■□ 3.46
DDR1-235ENST00000428153 DNAJC5BQ9UF47 199 aa36.54■■■■□ 3.44
DDR1-235ENST00000428153 UNC13AQ9UPW8 1703 aa36.36■■■■□ 3.41
DDR1-235ENST00000428153 PABPN1Q86U42 306 aaKnown RBP eCLIP36.29■■■■□ 3.4
DDR1-235ENST00000428153 ZCCHC6Q5VYS8 1495 aaKnown RBP36.23■■■■□ 3.39
DDR1-235ENST00000428153 DCAF1Q9Y4B6 1507 aa36.2■■■■□ 3.39
DDR1-235ENST00000428153 BICRAQ9NZM4 1560 aa36.15■■■■□ 3.38
DDR1-235ENST00000428153 SHROOM4Q9ULL8 1493 aa35.87■■■■□ 3.33
DDR1-235ENST00000428153 SCRIBQ14160 1630 aa35.59■■■■□ 3.29
DDR1-235ENST00000428153 CC2D2AQ9P2K1 1620 aa35.31■■■■□ 3.24
DDR1-235ENST00000428153 EIF4G1Q04637 1599 aaKnown RBP35.28■■■■□ 3.24
DDR1-235ENST00000428153 CECR2Q9BXF3 1484 aa35.22■■■■□ 3.23
DDR1-235ENST00000428153 NCAPD3P42695 1498 aa34.23■■■■□ 3.07
DDR1-235ENST00000428153 ATAD2BQ9ULI0 1458 aa34.08■■■■□ 3.05
DDR1-235ENST00000428153 SMARCA4P51532 1647 aa34.04■■■■□ 3.04
DDR1-235ENST00000428153 SMARCA2P51531 1590 aa34.04■■■■□ 3.04
DDR1-235ENST00000428153 HMGXB3Q12766 1538 aa33.99■■■■□ 3.03
DDR1-235ENST00000428153 BAZ1AQ9NRL2 1556 aaPredicted RBP33.94■■■■□ 3.02
DDR1-235ENST00000428153 PEG3Q9GZU2 1588 aa33.81■■■■□ 3
DDR1-235ENST00000428153 CUX2O14529 1486 aa33.77■■■■□ 3
DDR1-235ENST00000428153 ERCC6Q03468 1493 aa33.75■■■□□ 2.99
DDR1-235ENST00000428153 BAZ1BQ9UIG0 1483 aaKnown RBP33.74■■■□□ 2.99
DDR1-235ENST00000428153 DNAJC5Q9H3Z4 198 aa33.64■■■□□ 2.98
DDR1-235ENST00000428153 MROH2BQ7Z745 1585 aa33.6■■■□□ 2.97
DDR1-235ENST00000428153 NESP48681 1621 aa33.53■■■□□ 2.96
DDR1-235ENST00000428153 LAMC3Q9Y6N6 1575 aa33.45■■■□□ 2.95
DDR1-235ENST00000428153 THOC2Q8NI27 1593 aaKnown RBP33.26■■■□□ 2.92
DDR1-235ENST00000428153 PDS5BQ9NTI5 1447 aa33.26■■■□□ 2.91
DDR1-235ENST00000428153 CADPSQ9ULU8 1353 aa33.17■■■□□ 2.9
DDR1-235ENST00000428153 WIZO95785 1651 aa33.16■■■□□ 2.9
DDR1-235ENST00000428153 KIF21AQ7Z4S6 1674 aa33.12■■■□□ 2.89
DDR1-235ENST00000428153 RSF1Q96T23 1441 aaPredicted RBP32.94■■■□□ 2.86
DDR1-235ENST00000428153 MRC2Q9UBG0 1479 aa32.92■■■□□ 2.86
DDR1-235ENST00000428153 WDR62O43379 1518 aa32.87■■■□□ 2.85
DDR1-235ENST00000428153 TOP2AP11388 1531 aaKnown RBP32.83■■■□□ 2.85
DDR1-235ENST00000428153 CFTRP13569 1480 aa32.81■■■□□ 2.84
DDR1-235ENST00000428153 CEP164Q9UPV0 1460 aa32.8■■■□□ 2.84
DDR1-235ENST00000428153 FANCD2Q9BXW9 1451 aa32.74■■■□□ 2.83
DDR1-235ENST00000428153 PRDM2Q13029 1718 aa32.46■■■□□ 2.79
DDR1-235ENST00000428153 URB2Q14146 1524 aaKnown RBP32.46■■■□□ 2.79
DDR1-235ENST00000428153 CCDC88BA6NC98 1476 aa32.42■■■□□ 2.78
DDR1-235ENST00000428153 OSCARQ8IYS5 282 aa32.18■■■□□ 2.74
DDR1-235ENST00000428153 ABCC8Q09428 1581 aa32.18■■■□□ 2.74
DDR1-235ENST00000428153 IFT140Q96RY7 1462 aa32.17■■■□□ 2.74
DDR1-235ENST00000428153 TOPBP1Q92547 1522 aa32.13■■■□□ 2.73
DDR1-235ENST00000428153 DNMBPQ6XZF7 1577 aa32.04■■■□□ 2.72
DDR1-235ENST00000428153 TRIM41Q8WV44 630 aa32.03■■■□□ 2.72
DDR1-235ENST00000428153 ZNF608Q9ULD9 1512 aaPredicted RBP32.01■■■□□ 2.72
DDR1-235ENST00000428153 EIF4G3O43432 1585 aaKnown RBP31.88■■■□□ 2.69
DDR1-235ENST00000428153 TARBP1Q13395 1621 aaKnown RBP31.86■■■□□ 2.69
DDR1-235ENST00000428153 POLA1P09884 1462 aaPredicted RBP31.82■■■□□ 2.68
DDR1-235ENST00000428153 AQRO60306 1485 aaKnown RBP eCLIP31.73■■■□□ 2.672e-7■■■■■ 31.6
DDR1-235ENST00000428153 RIMBP3CA6NJZ7 1639 aa31.71■■■□□ 2.67
DDR1-235ENST00000428153 RIMBP3BA6NNM3 1639 aa31.71■■■□□ 2.67
DDR1-235ENST00000428153 RIMBP3Q9UFD9 1639 aa31.71■■■□□ 2.67
DDR1-235ENST00000428153 WDR97A6NE52 1622 aa31.67■■■□□ 2.66
DDR1-235ENST00000428153 SOGA1O94964 1423 aa31.66■■■□□ 2.66
DDR1-235ENST00000428153 ARHGEF11O15085 1522 aa31.65■■■□□ 2.66
DDR1-235ENST00000428153 RAD54L2Q9Y4B4 1467 aa31.62■■■□□ 2.65
DDR1-235ENST00000428153 CHD1O14646 1710 aa31.6■■■□□ 2.65
DDR1-235ENST00000428153 FGD5Q6ZNL6 1462 aa31.59■■■□□ 2.65
DDR1-235ENST00000428153 CUX1P39880 1505 aa31.57■■■□□ 2.64
DDR1-235ENST00000428153 TDRD9Q8NDG6 1382 aaKnown RBP31.54■■■□□ 2.64
DDR1-235ENST00000428153 FBLN2P98095 1184 aa31.47■■■□□ 2.63
DDR1-235ENST00000428153 MAGI1Q96QZ7 1491 aaPredicted RBP31.45■■■□□ 2.62
DDR1-235ENST00000428153 SNAPC4Q5SXM2 1469 aa31.44■■■□□ 2.62
DDR1-235ENST00000428153 GRIN2BQ13224 1484 aa31.42■■■□□ 2.62
DDR1-235ENST00000428153 SUPT5HO00267 1087 aaKnown RBP31.38■■■□□ 2.61
DDR1-235ENST00000428153 CYB5RLQ6IPT4 315 aa31.34■■■□□ 2.61
DDR1-235ENST00000428153 CHMP7Q8WUX9 453 aaPredicted RBP31.33■■■□□ 2.61
DDR1-235ENST00000428153 ARAP1Q96P48 1450 aa31.32■■■□□ 2.6
DDR1-235ENST00000428153 SYNJ1O43426 1573 aa31.31■■■□□ 2.6
DDR1-235ENST00000428153 CLASP1Q7Z460 1538 aa31.31■■■□□ 2.6
DDR1-235ENST00000428153 ABCA10Q8WWZ4 1543 aa31.31■■■□□ 2.6
DDR1-235ENST00000428153 SYNJ2O15056 1496 aa31.31■■■□□ 2.6
DDR1-235ENST00000428153 GAPVD1Q14C86 1478 aa31.29■■■□□ 2.6
DDR1-235ENST00000428153 PBRM1Q86U86 1689 aa31.24■■■□□ 2.59
DDR1-235ENST00000428153 ABCA5Q8WWZ7 1642 aa31.23■■■□□ 2.59
DDR1-235ENST00000428153 WRNQ14191 1432 aaPredicted RBP eCLIP31.17■■■□□ 2.58
DDR1-235ENST00000428153 TOP2BQ02880 1626 aa31.13■■■□□ 2.57
DDR1-235ENST00000428153 BIVM-ERCC5R4GMW8 1640 aa31.13■■■□□ 2.57
DDR1-235ENST00000428153 GRIN2AQ12879 1464 aa31■■■□□ 2.55
DDR1-235ENST00000428153 ADAMTS12P58397 1594 aa30.97■■■□□ 2.55
DDR1-235ENST00000428153 TRHP20396 242 aaPredicted RBP30.95■■■□□ 2.55
DDR1-235ENST00000428153 ERICH3Q5RHP9 1530 aa30.93■■■□□ 2.54
DDR1-235ENST00000428153 FHAD1B1AJZ9 1412 aa30.93■■■□□ 2.54
DDR1-235ENST00000428153 NUP160Q12769 1436 aa30.92■■■□□ 2.54
DDR1-235ENST00000428153 CEP170Q5SW79 1584 aa30.84■■■□□ 2.53
DDR1-235ENST00000428153 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
DDR1-235ENST00000428153 ERCC6L2Q5T890 1561 aa30.72■■■□□ 2.51
DDR1-235ENST00000428153 JPH4Q96JJ6 628 aa30.57■■■□□ 2.48
DDR1-235ENST00000428153 PRG4Q92954 1404 aaPredicted RBP30.56■■■□□ 2.48
DDR1-235ENST00000428153 RUSC2Q8N2Y8 1516 aa30.54■■■□□ 2.48
DDR1-235ENST00000428153 KIF27Q86VH2 1401 aa30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 138.5 ms